Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30462
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 125 4e-29
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 123 1e-28
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 122 2e-28
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 30 1.6
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.5
04_01_0253 - 3358090-3359052 28 6.5
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 8.6
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 125 bits (301), Expect = 4e-29
Identities = 57/92 (61%), Positives = 73/92 (79%)
Frame = +1
Query: 241 KVFPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 420
+ + + RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 421 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKSVK 516
CIGFT + ++TCYAQ +Q+R IR+K V+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 99 bits (238), Expect = 2e-21
Identities = 48/65 (73%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
Frame = +2
Query: 62 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD-A 238
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D A
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 80
Query: 239 ERSFR 253
R R
Sbjct: 81 YRKIR 85
Score = 78.6 bits (185), Expect = 5e-15
Identities = 32/70 (45%), Positives = 54/70 (77%)
Frame = +3
Query: 498 QKEKCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 677
+++ EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F+
Sbjct: 165 RRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224
Query: 678 ISKLMELHGE 707
+ KLME+HG+
Sbjct: 225 LGKLMEVHGD 234
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 123 bits (297), Expect = 1e-28
Identities = 57/92 (61%), Positives = 72/92 (78%)
Frame = +1
Query: 241 KVFPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 420
+ + + RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 421 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKSVK 516
CIGFT + ++TCYAQ +Q+R IR+K V+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 99 bits (238), Expect = 2e-21
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +2
Query: 62 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 235
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78
Score = 77.4 bits (182), Expect = 1e-14
Identities = 32/70 (45%), Positives = 53/70 (75%)
Frame = +3
Query: 498 QKEKCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 677
+++ EI+ + +L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P+F+
Sbjct: 165 RRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFD 224
Query: 678 ISKLMELHGE 707
+ KLME+HG+
Sbjct: 225 LGKLMEVHGD 234
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 122 bits (295), Expect = 2e-28
Identities = 56/92 (60%), Positives = 72/92 (78%)
Frame = +1
Query: 241 KVFPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 420
+ + + RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 421 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKSVK 516
CIGFT + ++TCYAQ +Q+R IR+K V+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (239), Expect = 1e-21
Identities = 49/65 (75%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
Frame = +2
Query: 62 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD-A 238
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D A
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 80
Query: 239 ERSFR 253
R R
Sbjct: 81 YRKIR 85
Score = 78.6 bits (185), Expect = 5e-15
Identities = 32/70 (45%), Positives = 54/70 (77%)
Frame = +3
Query: 498 QKEKCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 677
+++ EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F+
Sbjct: 165 RRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224
Query: 678 ISKLMELHGE 707
+ KLME+HG+
Sbjct: 225 LGKLMEVHGD 234
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +3
Query: 552 EVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEG 710
++VN IPD + + ++K C IY LR+ ++ + +++L++ GEG
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLREDGFKESNPAVK---ALARLVDQEGEG 83
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 296 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 385
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_01_0253 - 3358090-3359052
Length = 320
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 711 RLRREVPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRC 592
R RR +TSR+ +G +T + G R GRP RC
Sbjct: 67 RRRRRRETTSRATDGTMTTTTNTGGVRSKGRRGRGRPCRC 106
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 205 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 113
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,519,160
Number of Sequences: 37544
Number of extensions: 455652
Number of successful extensions: 1365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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