Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30462
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         107   9e-24
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         33   0.23 
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   29   2.9  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_15123| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  107 bits (257), Expect = 9e-24
 Identities = 48/70 (68%), Positives = 61/70 (87%)
 Frame = +3

Query: 498 QKEKCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 677
           +K+  +IITR+V+ ++L+EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P+F+
Sbjct: 48  RKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFD 107

Query: 678 ISKLMELHGE 707
           I KLME+HGE
Sbjct: 108 IGKLMEMHGE 117



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/51 (66%), Positives = 42/51 (82%)
 Frame = +1

Query: 361 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKSV 513
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKK V
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMV 52


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +3

Query: 450 EPTQDVLRPAHSGQSNQKEKCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 629
           EPT D  RP+H   ++   + +I  R +   ELR+ + +  P +   D  +  +   P+ 
Sbjct: 276 EPTPDPSRPSHRPGADNLTRDDI--RQIIQQELRKELRRSNPPNQNYDRNRRTYTGIPIS 333

Query: 630 DVCIRKVKVLKRPR 671
              IR+ ++ +RPR
Sbjct: 334 SKYIREGRIEERPR 347


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -2

Query: 255 LRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLR 76
           LRK L    S  +  RE  + L FNP E+ +V            L + ++  +   +SL+
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYVLQAESLKKANNVLQIELEELIKKEKSLK 361


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +3

Query: 474 PAHSGQSNQKEKCEIITR-DVTNSELRE---VVNKLIPDSIAKDIEKA 605
           P  +G +   +K E + R D+   + +E   V+NKL+ +SIAK + +A
Sbjct: 313 PTSTGMAAADQKDETLKRYDINGGDWKEAQSVINKLVDESIAKKVTEA 360


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 59  IVDPFTRKDWYDVKAPSMFSKRQ 127
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 148 VDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDR 2
           VD +       + +++ D+ PIF  + V  LLL T FT L+   +  DR
Sbjct: 159 VDNQFVPFQTLQTKKAFDVEPIFNGKDVFLLLLWTLFTYLQVISVLNDR 207


>SB_15123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
 Frame = +3

Query: 450 EPTQDVLRPAHSGQSNQKEKC-EIITRDVTNSELREVVNKLIPD------SIAKDIEKAC 608
           E     L+ +H  +    +KC E+    V N+   +   KL  +      S+ K+IEKA 
Sbjct: 14  EKLHRALKKSHESEKRLMQKCRELNAEIVANAAKVQTALKLSQEDQTTIASLKKEIEKAW 73

Query: 609 HGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGG 716
             +    D   R  + ++  + EI+ L +L  +G G
Sbjct: 74  KMVDAAHDKEQRARETIQSLKLEIANLSKLVEQGAG 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,166,674
Number of Sequences: 59808
Number of extensions: 510043
Number of successful extensions: 1494
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)