Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30462
         (721 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   142   7e-36
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    27   0.58 
DQ370038-1|ABD18599.1|  122|Anopheles gambiae putative TIL domai...    24   5.4  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   5.4  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   7.2  
EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.           23   9.5  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  142 bits (345), Expect = 7e-36
 Identities = 64/87 (73%), Positives = 76/87 (87%)
 Frame = +1

Query: 247 FPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 426
           F +F+L+AE V GR+VL NFHGM LTTDKLR MV KWQTLIE ++DVKTTDG++LRVFCI
Sbjct: 84  FRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCI 143

Query: 427 GFTNKDSLSQRKTCYAQHTQVRAIRKK 507
           GFT KDS+SQRKTCYAQH+Q++ IR K
Sbjct: 144 GFTIKDSMSQRKTCYAQHSQIKNIRAK 170



 Score =  119 bits (286), Expect = 1e-28
 Identities = 55/65 (84%), Positives = 59/65 (90%)
 Frame = +2

Query: 59  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 238
           +VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DA
Sbjct: 21  VVDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDA 80

Query: 239 ERSFR 253
           ERSFR
Sbjct: 81  ERSFR 85



 Score =  107 bits (257), Expect = 3e-25
 Identities = 51/80 (63%), Positives = 64/80 (80%), Gaps = 1/80 (1%)
 Frame = +3

Query: 480 HSGQSNQKEKCE-IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKV 656
           HS   N + K   II R++T+++L+ VV KL+PDSIAKDIEKAC  +YPL DV IRKVKV
Sbjct: 161 HSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKV 220

Query: 657 LKRPRFEISKLMELHGEGGG 716
           LK+PRF++S LMELHG+GGG
Sbjct: 221 LKKPRFDLSSLMELHGDGGG 240


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 27.1 bits (57), Expect = 0.58
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 617 LPSARCLHPKGESVEEAPFRDLEVDGTS 700
           +P   C H  G ++E+A    LE DGT+
Sbjct: 557 MPPKGCSHDDGPALEKAQLYQLESDGTA 584


>DQ370038-1|ABD18599.1|  122|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 122

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 290 LRPCTYSAINLNCGKTFPRQ 231
           +RP TY  IN  CG+ + R+
Sbjct: 77  VRPDTYFRINCICGEEYDRE 96


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 647 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 561
           L+ AN  QR++    L D++G+  RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -2

Query: 672 NGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 556
           NG    +   G  H   G    RPSR    ++  S C P
Sbjct: 146 NGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRP 184


>EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 253 QFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 363
           Q+  I + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 199 QYNFIYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 234


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 774,276
Number of Sequences: 2352
Number of extensions: 16499
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)