Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30462
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   106   2e-23
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    29   4.4  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   4.4  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   4.4  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  106 bits (254), Expect = 2e-23
 Identities = 51/89 (57%), Positives = 63/89 (70%)
 Frame = +1

Query: 247 FPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 426
           F +F+LIAE VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I
Sbjct: 79  FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 138

Query: 427 GFTNKDSLSQRKTCYAQHTQVRAIRKKSV 513
            FT K     +KT Y + +++R IR + +
Sbjct: 139 AFTKKSVNQVKKTSYTKTSKIRKIRSEMI 167



 Score =  101 bits (242), Expect = 5e-22
 Identities = 46/64 (71%), Positives = 53/64 (82%)
 Frame = +2

Query: 62  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 241
           VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL       
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLNNSEADF 79

Query: 242 RSFR 253
           R F+
Sbjct: 80  RKFK 83



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 37/70 (52%), Positives = 54/70 (77%)
 Frame = +3

Query: 498 QKEKCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 677
           + E    I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP+ +
Sbjct: 163 RSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVD 222

Query: 678 ISKLMELHGE 707
           + +L +LHG+
Sbjct: 223 LGRLHDLHGD 232


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 690 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 550
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = +3

Query: 447  LEPTQDVLRPAHSGQSNQKEKCEII-TRDVT-NSELREVVNKL 569
            +EPT + L PA S ++++ +  EI+  +DVT   E++E++ ++
Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +3

Query: 447  LEPTQDVLRPAHSGQSNQKEKCEII-TRDVT-NSELREVVNKL 569
            +EPT + L P  S ++++ E  EI+  +DVT   E++E++ ++
Sbjct: 5352 VEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELLTEV 5394


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = +3

Query: 447  LEPTQDVLRPAHSGQSNQKEKCEII-TRDVT-NSELREVVNKL 569
            +EPT + L PA S ++++ +  EI+  +DVT   E++E++ ++
Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +3

Query: 447  LEPTQDVLRPAHSGQSNQKEKCEII-TRDVT-NSELREVVNKL 569
            +EPT + L P  S ++++ E  EI+  +DVT   E++E++ ++
Sbjct: 5352 VEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELLTEV 5394


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = +3

Query: 447  LEPTQDVLRPAHSGQSNQKEKCEII-TRDVT-NSELREVVNKL 569
            +EPT + L PA S ++++ +  EI+  +DVT   E++E++ ++
Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +3

Query: 447  LEPTQDVLRPAHSGQSNQKEKCEII-TRDVT-NSELREVVNKL 569
            +EPT + L P  S ++++ E  EI+  +DVT   E++E++ ++
Sbjct: 5352 VEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELLTEV 5394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,773,728
Number of Sequences: 27780
Number of extensions: 369230
Number of successful extensions: 1220
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)