Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30462
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   124   6e-29
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           122   2e-28
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    33   0.25 
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    29   2.3  
At4g11720.1 68417.m01870 hypothetical protein                          29   4.1  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   7.2  
At5g65240.1 68418.m08207 leucine-rich repeat family protein / pr...    27   9.5  
At1g30730.1 68414.m03756 FAD-binding domain-containing protein s...    27   9.5  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  124 bits (299), Expect = 6e-29
 Identities = 56/87 (64%), Positives = 69/87 (79%)
 Frame = +1

Query: 247 FPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 426
           + + RL AE VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI
Sbjct: 81  YRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCI 140

Query: 427 GFTNKDSLSQRKTCYAQHTQVRAIRKK 507
            FT + +   ++TCYAQ +Q+R IR+K
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRK 167



 Score =  102 bits (244), Expect = 3e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%), Gaps = 1/65 (1%)
 Frame = +2

Query: 62  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD-A 238
           VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D A
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNA 80

Query: 239 ERSFR 253
            R  R
Sbjct: 81  YRKIR 85



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 36/79 (45%), Positives = 60/79 (75%), Gaps = 2/79 (2%)
 Frame = +3

Query: 477 AHSGQSNQ--KEKCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKV 650
           A S Q  Q  ++  +I+ R+ ++ +L+++V K IP++I ++IEKA  GIYPL++V IRKV
Sbjct: 156 AQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKV 215

Query: 651 KVLKRPRFEISKLMELHGE 707
           K+LK P+F++ KLM++HG+
Sbjct: 216 KILKAPKFDLGKLMDVHGD 234


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  122 bits (295), Expect = 2e-28
 Identities = 56/87 (64%), Positives = 69/87 (79%)
 Frame = +1

Query: 247 FPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 426
           + + RL AE VQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI
Sbjct: 81  YRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCI 140

Query: 427 GFTNKDSLSQRKTCYAQHTQVRAIRKK 507
            FT + +   ++TCYAQ +Q+R IR+K
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRK 167



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 49/65 (75%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
 Frame = +2

Query: 62  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD-A 238
           VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D A
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNA 80

Query: 239 ERSFR 253
            R  R
Sbjct: 81  YRKIR 85



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 38/79 (48%), Positives = 60/79 (75%), Gaps = 2/79 (2%)
 Frame = +3

Query: 477 AHSGQSNQ--KEKCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKV 650
           A S Q  Q  ++  EI+ ++ ++ +L+E+V K IP++I ++IEKA  GIYPL++V IRKV
Sbjct: 156 AQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKV 215

Query: 651 KVLKRPRFEISKLMELHGE 707
           K+LK P+F++ KLME+HG+
Sbjct: 216 KILKAPKFDLGKLMEVHGD 234


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 516 FHTFLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 358
           +H+ L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 433 YHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 635 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTLFFLIA 492
           +IAQRV  +AG+  +    +    V  LP F    V C+D T  F +A
Sbjct: 432 SIAQRVHGLAGVFALGLKKLGTAQVQDLPFFDTVKVTCSDATAIFDVA 479


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 480 HSGQSNQKEKCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 647
           H GQ +   +  ++ RD ++S     ++++  DS  K   +A HGI   RDV + +
Sbjct: 594 HHGQDDDVLQKMMLERDHSDSHYYHQLHRVHKDSKQKQRRRAKHGIVLPRDVHVER 649


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 193  SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 47
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


>At5g65240.1 68418.m08207 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 617

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 275 YSAINLNCGKTFPRQCQLVDQP 210
           ++A NL+CG TFP+ C     P
Sbjct: 188 FTANNLSCGGTFPQPCVTESSP 209


>At1g30730.1 68414.m03756 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 526

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 384 CEDNRWIRSTCLLHWFHQ*GLLEPTQDVLRPAHSGQSNQKEKCEIITRDVTNSELREVVN 563
           C + RWI S  +L W     +  PT  +L P  + +   K K + + R V+ + L  ++ 
Sbjct: 334 CTEMRWIDS--VLFWAGY-PVGTPTSVLLNPTVTKKLFMKRKSDYVKRPVSRTGLGLILK 390

Query: 564 KLI 572
           KL+
Sbjct: 391 KLV 393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,055,336
Number of Sequences: 28952
Number of extensions: 350708
Number of successful extensions: 1049
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)