Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30461
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma... 50 4e-07
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 28 1.3
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr... 27 3.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 3.9
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 26 5.2
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.8
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc... 26 6.8
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi... 26 6.8
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 9.0
>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 127
Score = 50.0 bits (114), Expect = 4e-07
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 100 MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFE 252
MSWQ YVD L+ + + +AAI G+ VWA S GF +S E+ + AGF+
Sbjct: 1 MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQ 52
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 339 ELGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 476
+L K G+ C+ T+ +++S Y E P +AA + E L +YL+ GY
Sbjct: 82 KLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 327 YHPRELGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 452
+HP + G G+ C+K A + YE+PI + + + G
Sbjct: 188 FHPEKSGSAGLRCLK---AFLTGNYEQPISGEASKLIENSFG 226
>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
3|||Manual
Length = 184
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = -3
Query: 633 SSH*LRR-HNLS---NIKTNERSSYHFIEYTKCSYLFPRGKNIILYTLRSRRASTSN 475
SSH LRR +L N++T+ ++ H +KC LF G+NI L T+ S R + ++
Sbjct: 25 SSHYLRRMFSLLEEWNLETDPKTLLHGC--SKCGSLFIFGRNIKLRTISSERKARTD 79
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 3.9
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Frame = -3
Query: 750 KAKF*YKFNSLCSNNY----FEEDGERIKRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNE 583
KAK F C NNY ED +R++++ + N + L S N SN+K +
Sbjct: 2161 KAKIYCMFAQFCDNNYSSPDLTEDFKRMEKLYFEKKNDIQQLERS----IVNASNMKEEK 2216
Query: 582 RSSYHFIEYTKCSYLFPRGKNIILYTLRSRRASTSNNH 469
H S++ + + + T RS+ + S H
Sbjct: 2217 MLKNHH-SREMSSFIIDEREYLRMSTFRSKMLTQSITH 2253
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/22 (40%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Frame = +3
Query: 633 SLVCTCDYFVD--SGPFLYAHR 692
+++C C+YF+D +GPFL +++
Sbjct: 322 AIMCRCEYFLDMLAGPFLESNQ 343
>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 624 SVMSLVCTCDYFVDSGPFLYAHRLPQNNYYCIM 722
S SL+C ++ D GP L+ + +YYC++
Sbjct: 22 SFSSLLCILCFYKD-GPLLFLYSPLSASYYCLL 53
>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 148
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +3
Query: 273 GGVTIAGTRLHLPQWHRPYHPRELGKVGV---HCMK 371
GG AG HL YHP GKVG+ H MK
Sbjct: 30 GGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMK 65
>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
27a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +3
Query: 273 GGVTIAGTRLHLPQWHRPYHPRELGKVGV---HCMK 371
GG AG HL YHP GKVG+ H MK
Sbjct: 30 GGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMK 65
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 182 MCGQSRKASKFQKMKWRR 235
MC S++ FQK KW R
Sbjct: 19 MCNYSKRLDTFQKKKWPR 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,569
Number of Sequences: 5004
Number of extensions: 64805
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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