Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30461
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865           51   1e-06
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297           51   1e-06
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750           49   4e-06
11_06_0690 + 26303733-26306540                                         32   0.58 
08_01_0984 - 9952630-9954132                                           29   5.4  

>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
          Length = 131

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
 Frame = +1

Query: 100 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFEK 255
           MSWQ YVD+ LM       +T AAI GHDG VWA+S  F +   +E+  I+  F++
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDE 56



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +3

Query: 345 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 473
           G  G+   KT QA+V+ +Y+EP+ P Q   VVE+LG+YL+  G
Sbjct: 88  GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130


>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
          Length = 131

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
 Frame = +1

Query: 100 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFEK 255
           MSWQ YVD+ LM       +T AAI GHDG VWA+S  F +   +E+  I+  F++
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDE 56



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +3

Query: 345 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 473
           G  G+   KT QA+V+ +Y+EP+ P Q   VVE+LG+YL+  G
Sbjct: 88  GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130


>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
          Length = 131

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
 Frame = +1

Query: 100 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFEK 255
           MSWQ YVD  LM       +T AAI GHDG+VWA+S  F +   +E+  I+  F++
Sbjct: 1   MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDE 56



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +3

Query: 252 EESLLTSGGVTIAGTRLHLPQWHRPYHPR-ELGKVGVHCMKTQQAVVISLYEEPIQPQQA 428
           E   L   G+ + GT+  + Q       R + G  G+   KT  ++++ +Y+EP+ P Q 
Sbjct: 56  EPGSLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQC 115

Query: 429 ASVVEKLGEYLITCG 473
             +VE+LG+YLI  G
Sbjct: 116 NMIVERLGDYLIEQG 130


>11_06_0690 + 26303733-26306540
          Length = 935

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 228 GEDCGWL*EESLLTSGGVTIAGTRLHLPQWHRPYHPR 338
           GEDC  +    L  SG +T+AG ++   +WHR  H R
Sbjct: 287 GEDCTTV----LNQSGRLTVAGAKISFRRWHRSVHAR 319


>08_01_0984 - 9952630-9954132
          Length = 500

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 239 WLALRRITANEWRRDDSGHAATSTSVAQTISSARTWQGRRA 361
           W A+RR+     R+  + HAA    V++ +  ART Q   A
Sbjct: 231 WKAMRRLKIGPERKLAAAHAALHVFVSEMVEKARTKQEEAA 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,337,985
Number of Sequences: 37544
Number of extensions: 423712
Number of successful extensions: 979
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)