Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30461
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.083
SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32)                   32   0.44 
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   30   1.8  
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  29   4.1  
SB_11945| Best HMM Match : EURL (HMM E-Value=9.7)                      29   4.1  
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)                   29   5.5  
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 148 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIV 240
           V +AAI G DG+ WA S GF +S+ E  +++
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELL 37


>SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32)
          Length = 1052

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 615 GVISVMSLVCTCDYFVDSGPFLYAHRLPQNNYYCIMN 725
           GV++V  +     Y   +GP +Y HRLP + +Y + N
Sbjct: 302 GVVTVKGVTTEELYQDPNGPKIYTHRLPSSEFYSLQN 338


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 345 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 476
           G  G   + T Q ++I  Y E + P   ++V EKL +Y    G+
Sbjct: 528 GNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVNGF 571


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 348 KVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 452
           K G+  +KT   ++++LY + + P       EKLG
Sbjct: 42  KTGIVAIKTATLILVALYSQEMSPSICVEASEKLG 76


>SB_11945| Best HMM Match : EURL (HMM E-Value=9.7)
          Length = 323

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 233 RLWLALRRITANEWRRDDSGHAATSTSVAQTISSARTWQG 352
           +L +A+ R    EWR  +  H     SVA  +SS  T  G
Sbjct: 185 KLGIAILRDPVTEWRHKEINHGDEVISVASVLSSPETESG 224


>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
          Length = 292

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -3

Query: 726 NSLCSNNYFEEDGERIKRVQNPQ---NNHMCTLNSSH*LRRHNLSNIKTNERSSYHF 565
           NS  +NN+F +  +     +N     NNH    N ++   R+N SNI +++ S+ HF
Sbjct: 203 NSNDNNNHFRKSNDNNNHYRNSNDNNNNHFRKSNDNNNHYRNNNSNINSSD-SNNHF 258


>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1065

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 257 ITANEWRRDDSGHAATSTSVAQTI 328
           I   EW  D++GH+  STS  Q +
Sbjct: 554 INTGEWATDENGHSMCSTSTKQVL 577


>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 191 QSRKASKFQKMKWRRLWLALRRITAN-EWRRDDSGHAATSTSVAQTISSARTWQGRR 358
           + RK  + +K + RR W   R+     +WRR+ SG    S    + +   R W+ RR
Sbjct: 182 ERRKWRQRRKWRQRRKWRQRRKWRQRRKWRREGSGDREGSGEEKE-VGMTRKWRQRR 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,877,877
Number of Sequences: 59808
Number of extensions: 496943
Number of successful extensions: 1078
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)