Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30461
         (767 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   5.9  
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    23   7.9  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   7.9  

>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
 Frame = +2

Query: 164  LPVMMAMCGQSRKASKFQKMKWRRLWLALRRITANEWR----RDDSGHAATS--TSVAQT 325
            LP+  A+C  +R  S+       +L    R  T  EW+     D +GH A+       + 
Sbjct: 857  LPICRAICEDTRVHSRRGTAAGAQLRKEERETTIAEWQATWDSDAAGHQASGYVRWAHRL 916

Query: 326  ISSARTWQGRR 358
            I     WQ R+
Sbjct: 917  IPDIGAWQSRK 927


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 278 RDDSGHAATSTSVAQTISSARTWQGRRALHEDTASCGHFSL*RTHPTS 421
           + +S + + S S+   I   +  +GR +   D    GH S  RTH  S
Sbjct: 95  KSESNNLSLSLSLVDMIPEEKL-RGRHSSESDREGMGHDSHKRTHRLS 141


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 239 TIFATSSFEISKPSDF-AHTL 180
           T+  ++SFE+ KP DF  H+L
Sbjct: 845 TLTESTSFELKKPKDFRKHSL 865


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 809,839
Number of Sequences: 2352
Number of extensions: 16758
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79834176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)