Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30461
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identic...    47   1e-05
At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to p...    47   1e-05
At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to S...    46   2e-05
At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to p...    46   2e-05
At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / aller...    45   5e-05
At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma mem...    29   3.4  
At1g12940.1 68414.m01503 high-affinity nitrate transporter, puta...    29   4.5  
At1g12530.1 68414.m01451 hypothetical protein ; expression suppo...    29   4.5  

>At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identical
           to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis
           thaliana]; identical to cDNA profilin (PRF2) GI:9965570
          Length = 131

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +1

Query: 100 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFEK 255
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+A I   FE+
Sbjct: 1   MSWQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFEE 56



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 27/43 (62%)
 Frame = +3

Query: 345 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 473
           G  GV   KT QA+V  +Y+EP+   Q   VVE+LG+YLI  G
Sbjct: 88  GPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVERLGDYLIESG 130


>At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to
           profilin 4 SP:Q38905 GI:1353768 from [Arabidopsis
           thaliana]
          Length = 134

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
 Frame = +1

Query: 100 MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFEK 255
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E+  I+  F++
Sbjct: 1   MSWQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFDE 59



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/43 (51%), Positives = 28/43 (65%)
 Frame = +3

Query: 345 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 473
           G  G+   KT Q++V  LYEEP+ P Q   VVE+LG+YLI  G
Sbjct: 91  GAGGITIKKTGQSMVFGLYEEPVTPGQCNMVVERLGDYLIEQG 133


>At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to
           SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
          Length = 168

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
 Frame = +1

Query: 100 MSWQDYVDKQLM---ASRCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGF 249
           MSWQ YVD  LM   A   +T AAI G DG+VWA+S  F ++  +E+  I   F
Sbjct: 38  MSWQTYVDDHLMCDVAGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGIKDDF 91



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 22/43 (51%), Positives = 26/43 (60%)
 Frame = +3

Query: 345 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 473
           G  GV   KT  A+V  +Y+EP+ P Q   VVE LGEYLI  G
Sbjct: 125 GAGGVTIKKTTLALVFGIYDEPMTPGQCNMVVENLGEYLIESG 167


>At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to
           profilin 3 SP:Q38904 GI:1353765 from [Arabidopsis
           thaliana]
          Length = 134

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
 Frame = +1

Query: 100 MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFEK 255
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E + I+  F++
Sbjct: 1   MSWQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFDE 59



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +3

Query: 345 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 473
           G  G+   KT Q+ V  +YEEP+ P Q   VVE+LG+YL+  G
Sbjct: 91  GAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLLEQG 133


>At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / allergen
           Ara t 8 identical to profilin 1 (Allergen Ara t 8)
           SP:Q42449 GI:1353770 from [Arabidopsis thaliana]
          Length = 131

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = +1

Query: 100 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFEK 255
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+  I   FE+
Sbjct: 1   MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEE 56



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 252 EESLLTSGGVTIAGTRLHLPQWHRPYHPR-ELGKVGVHCMKTQQAVVISLYEEPIQPQQA 428
           E   L   G+ + G +  + Q  +    R + G  GV   KT QA+V   Y+EP+   Q 
Sbjct: 56  EPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQC 115

Query: 429 ASVVEKLGEYLI 464
             VVE+LG+YLI
Sbjct: 116 NLVVERLGDYLI 127


>At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA11)
           identical to SP|Q9M2L4|ACAB_ARATH Potential
           calcium-transporting ATPase 11, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis
           thaliana}; strong similarity to calmodulin-stimulated
           calcium-ATPase [Brassica oleracea] GI:1805654
          Length = 1025

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 431 CGLLRLDGFFIERNDHSLLCLHAMHADLAKFARMIWSVPL 312
           CG+L   G  IE +D   L  H M A L K   M  S+PL
Sbjct: 686 CGILTAGGVAIEGSDFRNLPPHEMRAILPKIQVMARSLPL 725


>At1g12940.1 68414.m01503 high-affinity nitrate transporter,
           putative similar to trans-membrane nitrate transporter
           protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
           high-affinity nitrate transporter ACH1 [Arabidopsis
           thaliana] GI:3608362
          Length = 502

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 175 DGNVWAKSEGFEISKDEVAKIVAGFEKNH 261
           DG+ WA  +  E  KD+V K+++   KN+
Sbjct: 233 DGDYWAMHKSGEREKDDVGKVISNGIKNY 261


>At1g12530.1 68414.m01451 hypothetical protein ; expression
           supported by MPSS
          Length = 192

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 684 RIKRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFIE 559
           R+K  ++ +NN +  +  S  L+RH   N+KT + S   F E
Sbjct: 32  RLKENEDLRNNMISVVKESTSLKRHGAQNMKTRQLSDAIFEE 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,679
Number of Sequences: 28952
Number of extensions: 338348
Number of successful extensions: 772
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)