Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30460
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   138   6e-34
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    63   5e-11
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    63   5e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    43   6e-05
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    30   0.43 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   1.3  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   4.0  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   5.4  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   5.4  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   9.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  138 bits (335), Expect = 6e-34
 Identities = 60/71 (84%), Positives = 69/71 (97%)
 Frame = +1

Query: 1   IPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 180
           +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct: 356 VPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415

Query: 181 NDLVSEYQQYQ 213
           NDLVSEYQQYQ
Sbjct: 416 NDLVSEYQQYQ 426


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 24/61 (39%), Positives = 41/61 (67%)
 Frame = +1

Query: 25  AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 204
           A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y+
Sbjct: 378 AVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYE 437

Query: 205 Q 207
           +
Sbjct: 438 E 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 24/61 (39%), Positives = 41/61 (67%)
 Frame = +1

Query: 25  AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 204
           A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y+
Sbjct: 374 AVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYE 433

Query: 205 Q 207
           +
Sbjct: 434 E 434


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
 Frame = +1

Query: 19  KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DL 189
           +++   + N T+I  LFKR  +Q+  + +R AFL  Y  E + E +  E +S+ +   DL
Sbjct: 372 RVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADL 431

Query: 190 VSEYQ 204
           ++EY+
Sbjct: 432 INEYE 436


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = -2

Query: 349 GSLERREVERGLFNIETRASSERT*LSSISCSAPRQTLRPRRRWPPGTVGTRRQGRSCCS 170
           G L R  +     + E + S +   LS+ +  +   TL P + +PP + G++RQ  +   
Sbjct: 182 GPLGRSSLNLSSLSHELQTSQDSPSLSATNQLSSSDTLEPLQ-YPPSSFGSQRQFNASQD 240

Query: 169 QPQ*TPSR 146
            P+ +PS+
Sbjct: 241 SPKRSPSK 248


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 43  NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 150
           NS+ IQ L K I+   T  +R    ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 190 QGRSCCSQPQ*TPSRPCPRRCTNARKPC 107
           +G SCCS+   +PS   P  C+  +K C
Sbjct: 221 EGSSCCSKKDSSPSEK-PSCCSQEKKSC 247


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 37   IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 213
            + N   +  L+K + E+F+ +F RK  L WY   G+      E + N+N   SE  + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 384 SYYINTKSKSIVDLSKGERWKGG 316
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -3

Query: 540 ASLRVAVYCNNIPELPFVVKEKHRECKHNLLPRHNVYFLGYFIMHV 403
           ++++V +  +NI  L  V K K +  K+N LP  + YF+     ++
Sbjct: 326 SNMKVLLVIDNISILSVVTKYKDK--KNNFLPPKDFYFINLLFKYI 369


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 357 FCFSYLYSNFNSFRLQHA**NNLGSTR 437
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 141  ALAGVPMQESLAPEHSGEL---FRDALEQLLDGGGVSNEGGGHLETTR 7
            A  G+P  +S+   HS EL   F   L+  ++    SNE   H + TR
Sbjct: 1212 ASKGLPFDKSILDNHSAELNDAFNLFLKAAVEYKVDSNESSEHFQDTR 1259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,772
Number of Sequences: 5004
Number of extensions: 54423
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)