Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30460
(788 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 146 1e-35
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 145 3e-35
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 145 3e-35
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 145 3e-35
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 145 3e-35
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 144 6e-35
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 142 2e-34
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 142 2e-34
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 141 5e-34
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 69 4e-12
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 69 4e-12
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 69 4e-12
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 69 4e-12
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 69 4e-12
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 69 4e-12
At2g24340.1 68415.m02909 hypothetical protein 28 6.1
At3g42880.1 68416.m04495 leucine-rich repeat transmembrane prote... 28 8.1
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 146 bits (354), Expect = 1e-35
Identities = 64/71 (90%), Positives = 71/71 (100%)
Frame = +1
Query: 1 IPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 180
IPP+GLKMAATF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct: 357 IPPKGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 416
Query: 181 NDLVSEYQQYQ 213
NDLV+EYQQYQ
Sbjct: 417 NDLVAEYQQYQ 427
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 145 bits (352), Expect = 3e-35
Identities = 65/71 (91%), Positives = 70/71 (98%)
Frame = +1
Query: 1 IPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 180
IPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct: 356 IPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
Query: 181 NDLVSEYQQYQ 213
NDLVSEYQQYQ
Sbjct: 416 NDLVSEYQQYQ 426
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 145 bits (352), Expect = 3e-35
Identities = 65/71 (91%), Positives = 70/71 (98%)
Frame = +1
Query: 1 IPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 180
IPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct: 356 IPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
Query: 181 NDLVSEYQQYQ 213
NDLVSEYQQYQ
Sbjct: 416 NDLVSEYQQYQ 426
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 145 bits (352), Expect = 3e-35
Identities = 65/71 (91%), Positives = 70/71 (98%)
Frame = +1
Query: 1 IPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 180
IPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct: 356 IPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
Query: 181 NDLVSEYQQYQ 213
NDLVSEYQQYQ
Sbjct: 416 NDLVSEYQQYQ 426
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 145 bits (352), Expect = 3e-35
Identities = 65/71 (91%), Positives = 70/71 (98%)
Frame = +1
Query: 1 IPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 180
IPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct: 356 IPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
Query: 181 NDLVSEYQQYQ 213
NDLVSEYQQYQ
Sbjct: 416 NDLVSEYQQYQ 426
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 144 bits (349), Expect = 6e-35
Identities = 63/71 (88%), Positives = 70/71 (98%)
Frame = +1
Query: 1 IPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 180
IPP G+KMA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct: 357 IPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 416
Query: 181 NDLVSEYQQYQ 213
NDLVSEYQQYQ
Sbjct: 417 NDLVSEYQQYQ 427
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 142 bits (345), Expect = 2e-34
Identities = 64/71 (90%), Positives = 69/71 (97%)
Frame = +1
Query: 1 IPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 180
I PRGL MA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct: 356 IAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
Query: 181 NDLVSEYQQYQ 213
NDLVSEYQQYQ
Sbjct: 416 NDLVSEYQQYQ 426
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 142 bits (344), Expect = 2e-34
Identities = 63/71 (88%), Positives = 70/71 (98%)
Frame = +1
Query: 1 IPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 180
I P+GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct: 356 IAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
Query: 181 NDLVSEYQQYQ 213
NDLV+EYQQYQ
Sbjct: 416 NDLVAEYQQYQ 426
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 141 bits (341), Expect = 5e-34
Identities = 63/71 (88%), Positives = 69/71 (97%)
Frame = +1
Query: 1 IPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 180
I P GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct: 356 IAPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
Query: 181 NDLVSEYQQYQ 213
NDLV+EYQQYQ
Sbjct: 416 NDLVAEYQQYQ 426
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 68.9 bits (161), Expect = 4e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 16 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 195
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 196 EYQQ 207
+Y++
Sbjct: 431 DYEE 434
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 68.9 bits (161), Expect = 4e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 16 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 195
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 196 EYQQ 207
+Y++
Sbjct: 431 DYEE 434
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 68.9 bits (161), Expect = 4e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 16 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 195
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 196 EYQQ 207
+Y++
Sbjct: 431 DYEE 434
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 68.9 bits (161), Expect = 4e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 16 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 195
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 196 EYQQ 207
+Y++
Sbjct: 431 DYEE 434
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 68.9 bits (161), Expect = 4e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 16 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 195
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 196 EYQQ 207
+Y++
Sbjct: 431 DYEE 434
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 68.9 bits (161), Expect = 4e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 16 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 195
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 196 EYQQ 207
+Y++
Sbjct: 431 DYEE 434
>At2g24340.1 68415.m02909 hypothetical protein
Length = 322
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 13 GLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 132
GLK+ AT G T + E + + + +F+HW T
Sbjct: 186 GLKIGATTSGVKTKVDEDIEPLCRHYKCATMDSSFIHWIT 225
>At3g42880.1 68416.m04495 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase PRK1,
Lycopersicon esculentum, PIR:T07865
Length = 633
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 513 NNIPELPFVVKEKHRECKHNLLPRHNVYFLGYFIMHVGV*NY*SYYINT 367
NN + F K + P+ +VY LG ++ V + S Y+NT
Sbjct: 514 NNASQALFAFKSPEFVQNQQVSPKSDVYCLGIIVLEVMTGKFPSQYLNT 562
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,489,832
Number of Sequences: 28952
Number of extensions: 286713
Number of successful extensions: 762
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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