Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30459
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    29   0.048
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    29   0.048
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    29   0.048
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    29   0.048
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.78 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.4  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.2  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   7.2  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   9.6  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 28.7 bits (61), Expect = 0.048
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 475 CGRSWGLNEDDFVVLLGDGTTADYLWALFFRFW 377
           C R  G  E  F+V L       ++W L F FW
Sbjct: 109 CNRDLG-REKQFIVKLPSAERVAWMWCLIFAFW 140


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 28.7 bits (61), Expect = 0.048
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 475 CGRSWGLNEDDFVVLLGDGTTADYLWALFFRFW 377
           C R  G  E  F+V L       ++W L F FW
Sbjct: 109 CNRDLG-REKQFIVKLPSAERVAWMWCLIFAFW 140


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 28.7 bits (61), Expect = 0.048
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 475 CGRSWGLNEDDFVVLLGDGTTADYLWALFFRFW 377
           C R  G  E  F+V L       ++W L F FW
Sbjct: 109 CNRDLG-REKQFIVKLPSAERVAWMWCLIFAFW 140


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 28.7 bits (61), Expect = 0.048
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 475 CGRSWGLNEDDFVVLLGDGTTADYLWALFFRFW 377
           C R  G  E  F+V L       ++W L F FW
Sbjct: 109 CNRDLG-REKQFIVKLPSAERVAWMWCLIFAFW 140


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +3

Query: 471 PHRSHPSSPLKPKRREDPCLTCWSRNPSEQPDITIPTAAPTQPSKP-EVY 617
           P  S  S+   P     P + CWS   S  P   I +A PT    P ++Y
Sbjct: 302 PTYSTWSTVQTPTTVMSPTINCWSLTSSPPPPYQI-SAQPTPSQSPNQIY 350


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 420 PSPRSTTKSSSLRPQLLPHRSHPSS 494
           PSPR T K++S+  ++   R+ P+S
Sbjct: 175 PSPRITKKANSVSVKVENRRNSPNS 199


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 420 PSPRSTTKSSSLRPQLLPHRSHPSS 494
           PSPR T K++S+  ++   R+ P+S
Sbjct: 123 PSPRITKKANSVSVKVENRRNSPNS 147


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 420 PSPRSTTKSSSLRPQLLPHRSHPSS 494
           PSPR T K++S+  ++   R+ P+S
Sbjct: 306 PSPRITKKANSVSVKVENRRNSPNS 330


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 569 HHPHCCSHPALQT 607
           H PH  SHPA+ T
Sbjct: 239 HPPHLSSHPAIVT 251


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 569 HHPHCCSHPALQT 607
           H PH  SHPA+ T
Sbjct: 131 HPPHLSSHPAIVT 143


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 521 PLSNVLVKKPERTARHHHPHCCSHP 595
           PLS  L   P  +++HHH H  + P
Sbjct: 40  PLS--LGMSPYASSQHHHHHLQARP 62


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 445 DFVVLLGDGTTADY 404
           D + L GDGT+A++
Sbjct: 191 DSITLFGDGTSANF 204


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = +3

Query: 429 RSTTKSSSLRPQLLPHRSHPSSPLKPKRREDPCLTCWSRNPSEQPDITIPTAAP 590
           R +   SS    L+P   HPS P +    + P     S   S  P  + PT  P
Sbjct: 52  RESLSPSSAHTVLIPQPLHPSVP-RLGHPQWP-FAWGSLXRSSSPQTSAPTGPP 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,842
Number of Sequences: 336
Number of extensions: 1748
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)