Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30459
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   2.6  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    26   4.5  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   5.9  

>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = +3

Query: 384 LKNSAHK*SAVVPSPRSTTKSSSLRPQLLPHRSHPSSPLKPKRREDPCLTCWSRNPSEQP 563
           +K S    S VVPSPR  T + SL   +    +  + PL P+    P     SR  S   
Sbjct: 535 VKKSVVPSSPVVPSPRKAT-NKSLSMDVSKGNAFENGPLLPRPTTRPVSRGLSRGTSSSL 593

Query: 564 DITIPTAAP 590
              +  + P
Sbjct: 594 QQKVKASTP 602


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 453 LRPQLLPHRSHPSSPLKPKRREDPCLTCWSRNPSEQPDITIPTAAPTQ 596
           ++P+ L        P+ P+ R+    +   + PSE  D   PT  PT+
Sbjct: 1   MQPEQLNQEEESKCPVPPEVRDAWLKSHGGKKPSEVHDTPHPTMLPTE 48


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 545 KPERTARHHHPHCCSHPALQTRSLLHQVTKNPERKGGFYRRWCY 676
           KP+     H  HC  H    +R + H  TK P+ K   +   C+
Sbjct: 329 KPDHKPWKHEEHCSCHHDKFSRPVPHNGTK-PDHKPWKHEEHCH 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,742
Number of Sequences: 5004
Number of extensions: 26898
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)