Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30459
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.68 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.90 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   4.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.4  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 423 SPRSTTKSSSLRPQLLPHRSHP 488
           SP+S +   +LRPQ+ P R+ P
Sbjct: 402 SPQSQSTIQTLRPQVSPDRTSP 423


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 444 SSSLRPQLLPHRSHPSSPL 500
           +SSL+P L  H SH SS L
Sbjct: 276 NSSLQPSLASHHSHLSSAL 294


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 566 HHHPHCCSHPALQTRSLL 619
           HHHPH    P  Q  ++L
Sbjct: 464 HHHPHPPETPGPQVETIL 481


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 378 QNLKNSAHK*SAVVPSPRSTTKSSSLRPQLLPHRSHPSSPLKPKRR 515
           Q L+      S    SP ++TKS+ +R  L    S  +SP + K R
Sbjct: 316 QKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLR 361


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 63  PLPAHCKCIPPR 28
           P+P HC   PPR
Sbjct: 347 PVPIHCGNFPPR 358


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 484 CDRCGRSWGLN 452
           CD CG+S+G N
Sbjct: 234 CDICGKSFGYN 244


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 57  PAHCKCIPPRVW 22
           PA CKC   R W
Sbjct: 762 PAGCKCYNDRTW 773


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 457 GPSSSRTGRTHHPRSSPNEEK 519
           GP + R  R+H+ ++   EEK
Sbjct: 1   GPRTRRVKRSHNGKNGSPEEK 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,333
Number of Sequences: 438
Number of extensions: 1983
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)