Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30459
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19070.1 68416.m02422 cell wall protein-related similar to ve... 35 0.059
At1g26150.1 68414.m03192 protein kinase family protein similar t... 35 0.059
At3g24550.1 68416.m03083 protein kinase family protein contains ... 32 0.31
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 30 1.3
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 29 2.2
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 2.9
At2g45620.1 68415.m05672 nucleotidyltransferase family protein l... 29 3.9
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 29 3.9
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 29 3.9
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 28 5.1
At5g12310.1 68418.m01447 zinc finger (C3HC4-type RING finger) fa... 28 5.1
At1g49730.1 68414.m05575 protein kinase family protein contains ... 28 6.8
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 27 8.9
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 8.9
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 27 8.9
At1g28380.1 68414.m03487 expressed protein 27 8.9
>At3g19070.1 68416.m02422 cell wall protein-related similar to
vegetative cell wall protein gp1 [Chlamydomonas
reinhardtii] gi|12018147|gb|AAG45420;
Length = 346
Score = 34.7 bits (76), Expect = 0.059
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 372 PPQNLKNSAHK*SAVVPSPRSTTKSSSLRPQLLPHRSHPSSP--LKPKRREDPCLTCWSR 545
PP++ + + S + PSP S++ S + P L P P+ P + P + P L
Sbjct: 204 PPESSSSKRARLSNIFPSPLSSSPSPFVNPFLRPQAQEPTIPNFINPIPQISPGLPALFP 263
Query: 546 NPSEQPDITIPTAAPTQPSKPEV 614
NP+ P+ P P P++
Sbjct: 264 NPNPNPN---PNPIPNPIRNPDL 283
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 34.7 bits (76), Expect = 0.059
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +3
Query: 372 PPQNLKNSAHK*SAVVPSPRST-TKSSSLRPQLLPHRS-HPSSPLK--PKRREDPCLTCW 539
PP++L + S + P PR + +S RP P S HPS P PKRRE P
Sbjct: 179 PPRHLPSPPA--SEIPPPPRHLPSPPASERPSTPPSDSEHPSPPPPGHPKRREQP-PPPG 235
Query: 540 SRNPSEQPDITIPTAAPTQPSKP 608
S+ P+ P + P PS P
Sbjct: 236 SKRPTPSPPSPSDSKRPVHPSPP 258
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/80 (30%), Positives = 31/80 (38%)
Frame = +3
Query: 369 FPPQNLKNSAHK*SAVVPSPRSTTKSSSLRPQLLPHRSHPSSPLKPKRREDPCLTCWSRN 548
FP N + + + P + T + S P P S P P P P LT
Sbjct: 33 FPGDNATSPTREPTNGNPPETTNTPAQSSPPPETPLSSPPPEPSPPS----PSLT----G 84
Query: 549 PSEQPDITIPTAAPTQPSKP 608
P P TIP + P +PS P
Sbjct: 85 P---PPTTIPVSPPPEPSPP 101
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 32.3 bits (70), Expect = 0.31
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Frame = +3
Query: 372 PPQNLKNSAHK*SAVVPSPRSTTKSSSLRPQLLPHRSHPSSPLKPK---RREDPCLTCWS 542
PP N + +A P P +T S P PSSPL P LT
Sbjct: 18 PPTNSTTTTPPPAASSPPPTTTPSSPPPSPSTNSTSPPPSSPLPPSLPPPSPPGSLTPPL 77
Query: 543 RNPSEQPDITIPTAAPTQPSKP 608
PS IT +PT PS P
Sbjct: 78 PQPSPSAPITPSPPSPTTPSNP 99
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +3
Query: 411 AVVPSPRSTTKSSSLRPQL----LPHRSHPSSPLKPKRREDPCLTCWSRNPSEQPDITIP 578
++VPSP STT S P P S PSSP P P + + P P +
Sbjct: 453 SIVPSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPT 512
Query: 579 TAAP-TQPSKPEV 614
T +P P P +
Sbjct: 513 TPSPGGSPPSPSI 525
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = +3
Query: 420 PSPRSTTKSSSLRPQLLPHRSHPS---SPLKPKRREDPCLTCWSRNPSEQPDITIPTAAP 590
P+P T +P P + P+ +P KPK P P+ P PT AP
Sbjct: 44 PTPAPTPPKPKPKPAPTPPKPKPAPAPTPPKPKPAPAPTPPKPKPKPAPTPPNPKPTPAP 103
Query: 591 TQPSKPE 611
T P KP+
Sbjct: 104 T-PPKPK 109
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +3
Query: 420 PSPRSTTKSSSLRPQLLPHRSHPSSPLKPKRREDPCLTCWSRNPSEQPDITIPTAAPTQP 599
PSP+ T + P+ + + P KPK E P + PS +P+ P+ P+ P
Sbjct: 407 PSPKPTPTPKAPEPKKEINPPNLEEPSKPKPEESP----KPQQPSPKPE--TPSHEPSNP 460
Query: 600 SKPE 611
+P+
Sbjct: 461 KEPK 464
>At2g45620.1 68415.m05672 nucleotidyltransferase family protein low
similarity to SP|O13833| Caffeine-induced death protein
1 {Schizosaccharomyces pombe}; contains Pfam profiles
PF03828: PAP/25A associated domain, PF01909:
Nucleotidyltransferase domain
Length = 764
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 381 NLKNSAHK*SAVVPSPRSTTKSSSLRPQLLPHRSH 485
NLK +++ ++ P+ST +S++ P L HR+H
Sbjct: 175 NLKYDSNQHEQLMRHPQSTLSNSNMDPNLSHHRNH 209
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = +3
Query: 420 PSPRSTTKSSSLRPQLLPHRSHPSSPLKPKRREDPCLTCWSRNPSEQPDITIPTAAPTQP 599
P+P + + P SHPS+P P P +S P P + P + P
Sbjct: 98 PTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPSPIVDP 157
Query: 600 SKP 608
P
Sbjct: 158 GTP 160
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = +3
Query: 420 PSPRSTTKSSSLRPQLLPHRSHPSSPLKPKRREDPCLTCWSRNPSEQPDITIPTAAPTQP 599
P+P + + P SHPS+P P P +S P P + P + P
Sbjct: 98 PTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPSPIVDP 157
Query: 600 SKP 608
P
Sbjct: 158 GTP 160
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/69 (27%), Positives = 27/69 (39%)
Frame = +3
Query: 408 SAVVPSPRSTTKSSSLRPQLLPHRSHPSSPLKPKRREDPCLTCWSRNPSEQPDITIPTAA 587
S V P +S ++P P P+SP+KP P + P + P PT
Sbjct: 137 SPVKPPTTPPVQSPPVQP---PTYKPPTSPVKPPTTTPPVKPPTTTPPVQPPTYNPPTTP 193
Query: 588 PTQPSKPEV 614
P+ P V
Sbjct: 194 VKPPTAPPV 202
>At5g12310.1 68418.m01447 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 254
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -3
Query: 544 LDQHVRQGSSLRLGLS--GDDGCDRCGR 467
LD+ QGSSLRLG GD+G R GR
Sbjct: 155 LDEFYMQGSSLRLGNRRWGDNGFVRAGR 182
>At1g49730.1 68414.m05575 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 663
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 457 GPSSSRTGRTHHPRSSPN 510
GPSSS T R+H+ RS P+
Sbjct: 638 GPSSSTTSRSHYSRSLPH 655
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 429 RSTTKSSSLRPQLLPH-RSHPSSPLKPKRREDP 524
+S +S PQ P +S P SPL PK +E+P
Sbjct: 41 QSPPQSPLFHPQSPPEPKSLPLSPLSPKSKEEP 73
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +3
Query: 417 VPSPRSTTKSSSLRPQLLPHRSHPSSPLKPKRREDPCLTCWSRNPS--EQPDITIPTAAP 590
VPSP + + P P S P P P +T PS PD+T P
Sbjct: 162 VPSPTPPVPTDPM-PSPPPPVSPPPPTPTPSVPSPPDVTPTPPTPSVPSPPDVTPTPPTP 220
Query: 591 TQPSKPEV 614
+ PS P+V
Sbjct: 221 SVPSPPDV 228
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 369 FPPQNLKNSAHK*SAVVPSPRSTTKSSSLRPQLLPHRSHPSSPLKPKRRED 521
FP +NL++ A VP PR + SSSLR Q+ PL K +E+
Sbjct: 1023 FPGRNLRSPAVM-EPPVPRPRMVSGSSSLREQV-----EQQQPLSAKSQEE 1067
>At1g28380.1 68414.m03487 expressed protein
Length = 612
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 420 PSPRSTTKSSSLRPQLLPHRSHPSSPLKPKRREDPCLTCWSRNPSEQPDITIPTAA 587
P+P +T S + + PS P+KPK R P EQP + T A
Sbjct: 530 PNPATTKPQSKIDINSAVYPRGPSPPVKPKLLSLVDTKEVMRGPEEQPGYWVVTGA 585
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,683,121
Number of Sequences: 28952
Number of extensions: 164641
Number of successful extensions: 693
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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