Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30458
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.5  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   2.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.8  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.6  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 374 QTRRNPEWRMRTT 336
           QTRRNP +R RT+
Sbjct: 226 QTRRNPYYRPRTS 238


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 286 DCSNTSSGTSYPTVAAPAPMNLAAESM 206
           DC+  SS    P   AP  ++LAA  +
Sbjct: 30  DCTTASSWPGRPPKRAPVGLSLAASHL 56


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 343 EQLLLEGGVPGIAD 302
           EQ+L EGG P + D
Sbjct: 837 EQILAEGGCPNLYD 850


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 651 VYVQHFIADFCLYYIIK*IAFLL 583
           ++  H +   C+YY +  + FLL
Sbjct: 122 IFTVHLLFLLCIYYFVVPLFFLL 144


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 196 SLRTLTLLPNSLVLVQRQWDSWFRS 270
           ++R    L NSL L +RQ   WF++
Sbjct: 182 TIRRKAELANSLGLSERQVKIWFQN 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,862
Number of Sequences: 336
Number of extensions: 4427
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)