Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30458
(721 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_58850| Best HMM Match : Pro_Al_protease (HMM E-Value=3.9) 35 0.058
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05) 34 0.13
SB_17212| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) 30 1.6
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 30 2.2
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_16731| Best HMM Match : Neocarzinostat (HMM E-Value=0.93) 29 2.9
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 29 2.9
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 29 5.0
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 29 5.0
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 29 5.0
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 29 5.0
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) 29 5.0
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2) 28 8.8
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 28 8.8
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 28 8.8
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +2
Query: 281 TVFGSLIIGYARNPSLKQQLFSYAILGFALSE 376
TVFGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 124 TVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +3
Query: 93 SALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFIGAGAATVG 254
+A +RP + +VPA P + A R FQT+S +D+DSAAKFIGAGAATVG
Sbjct: 61 TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVG 114
>SB_58850| Best HMM Match : Pro_Al_protease (HMM E-Value=3.9)
Length = 378
Score = 35.1 bits (77), Expect = 0.058
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -1
Query: 301 DEGAEDCSNTSSGTSYPTVAAPAP-MNLAAESMSLVTDVVWKDRTAESCVGTAGTICVWV 125
D+ ++ C T+ YPT P P + A E+M TD W DR + + + + V
Sbjct: 20 DQPSDPCQRTADQNPYPTQRDPTPALESAPEAMLDATDTAW-DRLSVTYFLESEALHVAA 78
Query: 124 GTAASGRTSAELQ 86
SGR LQ
Sbjct: 79 DACRSGRRRVRLQ 91
>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 983
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = -1
Query: 301 DEGAEDCSNTSSGTSYPTVAAPAP-MNLAAESMSLVTDVVWKDRTAES---CVGTAGTIC 134
D+ ++ C T+ YPT P P + A +M TD W + S G G +C
Sbjct: 26 DQPSDPCQRTADQNPYPTQGDPTPALESAPAAMPDATDTAWGRKLCTSTPMIAGAVGVMC 85
Query: 133 VWVG 122
V G
Sbjct: 86 VCGG 89
>SB_17212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -1
Query: 292 AEDCSNTSSGTSYPTVAAPAP-MNLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTA 116
++ C T+ +YPT P P + A +M TD W +R + + + + V G
Sbjct: 191 SDHCQRTADQNTYPTQRDPTPALESAPAAMPDATDTAW-NRLSVTYFLESEALQVAAGAC 249
Query: 115 ASGRTSAELQ 86
SGR L+
Sbjct: 250 RSGRRHVRLR 259
>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
Length = 565
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 227 EFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 123
E R NVLSD GLE CR LC + + C G
Sbjct: 76 EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Frame = -3
Query: 254 SHCRCTSTN---EFGSRVNVL-----SDRC--GLEGPHCRELCRDSRYHLCMGGYCCKWS 105
++C+C S+ E G ++V+ +D C + C C Y C+ G C KW
Sbjct: 1151 ANCKCLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEYQ-CVSGACVKWP 1209
Query: 104 HQC---RVAEDG--RPGCRGDQSG 48
C + EDG PG G Q G
Sbjct: 1210 LTCDGKKDCEDGTDEPGICGVQIG 1233
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 90 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTK--DIDSAAKFIGAGAATVG*LV 263
NS ++ PL +VP +T ++PA +A + + V +DS+ + +T L+
Sbjct: 79 NSTMILPLTSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSLSTT--LI 136
Query: 264 PELVLEQSSAPSSSAMPGTP 323
P + S P ++ + TP
Sbjct: 137 PS--ISTSILPYNTTVIATP 154
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 90 NSALVRPLAAVPTHTQMVPAVPTQLSAVRSFQTTSVTK--DIDSAAKFIGAGAATVG*LV 263
NS ++ PL +VP +T ++PA +A + + V +DS+ + +T L+
Sbjct: 481 NSTMILPLTSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTT--LI 538
Query: 264 PELVLEQSSAPSSSAMPGTP 323
P + S P ++ + TP
Sbjct: 539 PS--ISTSILPYNTTVIATP 556
>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1786
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 304 DDEGAEDCSNTSS-GTSYPTVAAPAPMNLAAESMSLVTDVV 185
D++ A+ CS+TSS + TVAA N+A S S + V
Sbjct: 1216 DEQNAQTCSSTSSLAEAIVTVAASVATNVATTSSSTTLEAV 1256
>SB_16731| Best HMM Match : Neocarzinostat (HMM E-Value=0.93)
Length = 215
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 304 DDEGAEDCSNTSS-GTSYPTVAAPAPMNLAAESMSLVTDVV 185
D++ A+ CS+TSS + TVAA N+A S S + V
Sbjct: 3 DEQNAQTCSSTSSLAEAIVTVAASVATNVATTSSSTTLEAV 43
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 457 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 350
+V LK ESEE E H EQ H +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 188 GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 96
G G C +LC+ +++C G G C +W+ C
Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423
>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 188 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 39
G + P E CR + C C +++HQC E+G P S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414
>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
Length = 186
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 97 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 210
HW + + PI RW+ L H+SL P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165
>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
Length = 718
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 29 KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 187
++ VC TD+PC + H ++ C T +T P T C T S +PD
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 110 TCSSTHPYTDGTCCPYTALCSAV 178
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -3
Query: 236 STNEFGSRVNVLS-DRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRG 60
ST E +R+ ++S D+C + CR+ C+ S + MG C + + + ++A P C G
Sbjct: 8 STQEKLTRIAIVSTDKC--KPKRCRQECKKSCPVVRMGKLCIEVTPETKLAAISEPLCIG 65
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 110 TCSSTHPYTDGTCCPYTALCSAV 178
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
Length = 201
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -3
Query: 281 FQYQLRNQLSHCR-CTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWS 105
F +L ++ C+ C S N+ R+ ++ R CR HLC+G C+W
Sbjct: 138 FSEKLADKAKACKNCQSKNK---RLKA-GNKAVKRAKETRNGCRKCDVHLCVGDCFCEWH 193
Query: 104 HQCR 93
Q R
Sbjct: 194 QQRR 197
>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
Length = 519
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 245 RCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRY 141
R T T +FG +VN+ S LEG R+ D+ +
Sbjct: 16 RATFTKDFGCQVNICSASASLEGEIQRQRNTDTNF 50
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -1
Query: 427 ESEEQQERHHKTEQTHSLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 287
+ + QER +TEQTH QG+ Q +Q ++G G + D+G E
Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 445 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 353
LK E E+QQ +HHK E+ Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456
>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 493
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 402 WRSCCSSLSKLFTFKNTTTAILHMRFQCILSGVDSQESNVWKPHPHSDAR 551
W + C+S SK + +TT H C L G E W P PH+ R
Sbjct: 156 WDNTCTSHSKC---QGSTT---HSIRPCTLQGRSPIEPTPWSPTPHTTGR 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,510,079
Number of Sequences: 59808
Number of extensions: 570757
Number of successful extensions: 2085
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2078
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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