Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30458
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    45   4e-05
At2g10340.1 68415.m01086 hypothetical protein                          31   0.58 
At2g07680.1 68415.m00992 ABC transporter family protein                30   1.8  
At3g18215.1 68416.m02317 expressed protein contains Pfam profile...    29   3.1  
At5g22110.1 68418.m02574 DNA polymerase epsilon subunit B family...    29   4.1  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   7.2  
At3g13640.1 68416.m01718 RNase L inhibitor protein, putative sim...    28   7.2  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   7.2  
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea...    27   9.5  
At1g29220.1 68414.m03574 transcriptional regulator family protei...    27   9.5  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +2

Query: 284 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 376
           VF SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 38  VFSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At2g10340.1 68415.m01086 hypothetical protein
          Length = 85

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -1

Query: 334 LLEGGVPGIADDEGAEDCSNTSSGTSYPTVAAPAPMNLAAESMSLVTDVVWKDRTAESCV 155
           LL GG P  A +  A+   +     + PT  A AP++L+ E +  +   V KD +     
Sbjct: 22  LLTGGDPPSAAELAAKTVEDQLPREANPTAPAVAPLSLSLEDLKAILATVTKDLSQRLTA 81

Query: 154 GT 149
           G+
Sbjct: 82  GS 83


>At2g07680.1 68415.m00992 ABC transporter family protein 
          Length = 1194

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 127 PIHRWYLLSLHSSLQ-CGPSRPHRSLRTLTLLPNSLVLVQRQWDSWFRSW 273
           P+++W  + + S+ +     +  R  +T  LL N   L    WD+WF  W
Sbjct: 186 PVNKWISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADW 235


>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599
          Length = 244

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 354 FWVSPCLRLWVCSVL*WRSCCSSLSKLFTFKNTTTAIL-HMRFQCILSGVDSQESNV 521
           F+ S  L LW    +    CC  +S +  F +TTT+   H+  Q      DS +  +
Sbjct: 181 FYFSFPLFLWTFGPIPMFVCCCMMSSILYFLDTTTSFTRHLHSQSFRETADSMDGEI 237


>At5g22110.1 68418.m02574 DNA polymerase epsilon subunit B family
           contains Pfam profile: PF04042 DNA polymerase epsilon
           subunit B
          Length = 523

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 178 PSRPHRSLRTLTLLPNSLVLVQRQWDSWFRSWYWNSLRLPHH 303
           P  P  S  +L ++ ++ ++ + ++D W R + W++  LP H
Sbjct: 85  PEEPTTSASSLAII-DAFLVPKDEFDRWLRVYVWHTSSLPIH 125


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 22  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 132
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At3g13640.1 68416.m01718 RNase L inhibitor protein, putative
           similar to 68 kDa protein HP68 GI:16755057 from
           [Triticum aestivum]
          Length = 603

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 446 EHYYCHPTYEVSVYTIWSGQPGIECLETSP 535
           EH +   TY      ++ GQP ++C+  SP
Sbjct: 523 EHDFIMATYLADRVIVYEGQPAVKCIAHSP 552


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 226  NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 98
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069


>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400) (1
           weak); similar to Hypothetical RAE1-like
           protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
           mRNA-associated protein mrnp 41 ((mRNA export protein)
           (GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
           [Homo sapiens]
          Length = 349

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 157 HSSLQCGPSRPHRSLRTLTLLPNSLVLVQRQWDSWFRSW 273
           + S +  PS P  S+ +L+  P + +LV   WD+  R W
Sbjct: 15  NKSYEVTPS-PADSISSLSFSPRADILVATSWDNQVRCW 52


>At1g29220.1 68414.m03574 transcriptional regulator family protein
           similar to Transcriptional regulator protein HCNGP
           (Swiss-Prot:Q02614) [Mus musculus]
          Length = 351

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -1

Query: 322 GVPGIADDEGAEDCSNTSSGTSYPTVAAPAPMNLAAESMSLVTD 191
           G  G+AD E  +D S  SS T       P P    +E +    D
Sbjct: 107 GESGVADGERGDDASGESSDTLLDQFLPPRPRERCSEELQRKID 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,524,136
Number of Sequences: 28952
Number of extensions: 365109
Number of successful extensions: 1162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)