Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30457
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    28   0.069
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   1.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   1.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.1  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    24   1.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   1.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.6  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   6.0  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 28.3 bits (60), Expect = 0.069
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 163 LHQREHTDQRPYS 201
           +H+R HTD+RPYS
Sbjct: 97  IHERTHTDERPYS 109


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 139 FHYVASCSLHQREHTDQRPYSIR 207
           F   +S + H R H+ +RPY  R
Sbjct: 59  FSQSSSVTTHMRTHSGERPYRCR 81


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 139 FHYVASCSLHQREHTDQRPYSIR 207
           F   +S + H R H+ +RPY  R
Sbjct: 315 FSQSSSVTTHMRTHSGERPYRCR 337


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 114  GSGICDLGVPLCGIVQPPPTRAHRP 188
            GS     GVPL G   PPP+ +  P
Sbjct: 1096 GSSSSSEGVPLKGTAVPPPSGSSGP 1120



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 686 ATEDGFAPPEEIDGDNPS 739
           +T+DG   PE  +G +PS
Sbjct: 710 STKDGTTVPESNNGSSPS 727


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 139 FHYVASCSLHQREHTDQRPY 198
           F  VA+   H R HT +RPY
Sbjct: 47  FVQVANLRRHLRVHTGERPY 66



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 166 HQREHTDQRPY 198
           H R HT +RPY
Sbjct: 28  HMRLHTGERPY 38


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
 Frame = +1

Query: 136 VFHYVASCS----LHQREHTDQRPYSIR 207
           + H V SC     +H R HT +RP+  +
Sbjct: 139 ICHRVLSCKSALQMHYRTHTGERPFKCK 166


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 139 FHYVASCSLHQREHTDQRPY 198
           F  VA+   H R HT +RPY
Sbjct: 200 FVQVANLRRHLRVHTGERPY 219



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 166 HQREHTDQRPY 198
           H R HT +RPY
Sbjct: 181 HMRLHTGERPY 191


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 354 PCPMGRPSRAPLRHMPHLHS 295
           P PM RP  A L   PH+++
Sbjct: 267 PYPMQRPKSASLSPPPHVYN 286


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 531 PSDKRIESHSRWIRKRERLLLR 596
           PSD   ++  R+ R RERL+ R
Sbjct: 552 PSDYVKQTERRFYRHRERLVAR 573


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,825
Number of Sequences: 336
Number of extensions: 4343
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)