Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30457
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    50   5e-07
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   3.8  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   5.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    26   5.0  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   5.0  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   8.7  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
 Frame = +1

Query: 202 IRAIVPIDKLVKGRFQDNLSFCNGSR---NSLTPTMEVRHMTQWRTRRSAHGARGLGRPE 372
           I  +V  ++L + + QDNL F   ++   +   P  +   + + R  R     R +    
Sbjct: 74  IDKVVDPERLSRCKMQDNLEFVQWAKRFWDQYYPGGDYDALAR-RGNRGPANTRVMNSSA 132

Query: 373 GRCR*ETRRPCRQSRS*TPNHWES*YNSQ-ISTS*FVTDKSKCQG*SKVVDELNHQINEL 549
           G      RR      S TP+  +S  N+  +S++       + +   + +  L  Q+ E+
Sbjct: 133 GATGPSRRRQVSSGSS-TPSMTKSSANNNNVSSTANTAAVLRAKQAQQQITSLETQLYEV 191

Query: 550 KATVDGLEKERDFYFGKLRDIEVICQ 627
             T+ GLE+ERDFYF KLR+IE++ Q
Sbjct: 192 NETMFGLERERDFYFNKLREIEILVQ 217



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +3

Query: 6   RFQDNFEFLQWFKKFFDANYDGRDYDAFEAR 98
           + QDN EF+QW K+F+D  Y G DYDA   R
Sbjct: 87  KMQDNLEFVQWAKRFWDQYYPGGDYDALARR 117


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = +1

Query: 430 NHWE---S*YNSQIST--S*FVTDKSKCQG*SKVVDELNHQINELKATVDGLEKE 579
           NH+    S Y +QI +  S     +++C    + ++ELN QI+ELK  ++   K+
Sbjct: 555 NHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKK 609


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 153 IVQPPPTRAHRPAPIQHSGNS 215
           I + PP  AHR  P +H GN+
Sbjct: 84  IPKKPPVSAHRRGPRKHRGNA 104


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 738 EGLSPSISSGGAKPSSVAYKISRNLLHYRSIVLFFHL 628
           +G+SP ISS   KPS + + +  N    +S+   F L
Sbjct: 215 QGISPDISSNIIKPSYLLHFLESNPYFLKSLGSLFEL 251


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 523 ELNHQINELKATVDGLEKERDFYFGKLRD 609
           EL  +I ELK ++  +  E DF+  +LRD
Sbjct: 585 ELAQEIRELKMSILMVRTEMDFHLQELRD 613


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 508 SKVVDELNHQINELKATVDGL 570
           S+ +DELN+ I ELKA ++ +
Sbjct: 626 SESIDELNNNIEELKAQLNAI 646


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +1

Query: 517 VDELNHQINELKATVDGLEKERDFY-----FGKLRDIEVICQEMEEQHNAPIVQKIS*YF 681
           +DEL +++  L  T     +E D Y       ++  + +  Q ++EQ NAP  Q+I  Y 
Sbjct: 278 LDELLNKLKHLTLTHRWTLRETDLYVYRASLAEIDSMRIDGQFLDEQGNAPAGQRILLYL 337

Query: 682 I 684
           +
Sbjct: 338 L 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,374
Number of Sequences: 5004
Number of extensions: 69522
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)