Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30457
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 64 1e-10
04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191... 56 2e-08
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094... 31 0.98
03_02_0223 + 6548810-6549025,6549159-6549211,6549457-6549492,654... 31 0.98
07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107 31 1.3
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93... 30 2.3
12_02_0306 + 17307166-17309091 29 3.9
12_01_1114 + 11899808-11900089,11900278-11900451,11901269-11901604 28 6.9
04_01_0601 + 7918220-7918559,7919082-7919158 28 6.9
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 28 9.1
08_02_0391 - 16612929-16613867 28 9.1
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821... 28 9.1
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 63.7 bits (148), Expect = 1e-10
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Frame = +1
Query: 214 VPIDKLVKGRFQDNLSFCNGSRNSLTPTMEVRHMTQWRTRRSAHGARGLGRPEGRCR*ET 393
+ ++KL KGR DNL F + ++ M + ++G R +
Sbjct: 91 IEVNKLTKGRPLDNLEFMQWMKR-YCDSVNGGFMNSYNASERRESSKGGKETNRRTSVPS 149
Query: 394 RRPCRQS----RS*TPNHWES*YNSQISTS*FVTDKSKCQG*SKVVDELNHQINELKATV 561
+ P + S ++ +H N + + +K + + QI ELK V
Sbjct: 150 QAPAKSSSATHKAQASSHGAKKANGHAPNAP-PSRSAKPSPANSAGPAYDEQITELKLLV 208
Query: 562 DGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKI 669
D LEKERDFYF KLRD+E++CQ E +H PIV I
Sbjct: 209 DSLEKERDFYFSKLRDVEILCQSPEVEH-LPIVNAI 243
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 15 DNFEFLQWFKKFFDANYDG--RDYDAFEAR 98
DN EF+QW K++ D+ G Y+A E R
Sbjct: 103 DNLEFMQWMKRYCDSVNGGFMNSYNASERR 132
>04_04_1332 +
32718584-32718706,32718892-32718960,32719069-32719155,
32719865-32719971,32720066-32720187,32720462-32720535,
32720833-32720946,32721100-32721213
Length = 269
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = +1
Query: 517 VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQH--NAPIVQKI 669
+ +L+ +I LK ++D EKERDFYF KLRDIE++CQ E +H VQKI
Sbjct: 188 IQQLSEKIAGLKISMDSAEKERDFYFSKLRDIEILCQRPELEHLPMTKAVQKI 240
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 15 DNFEFLQWFKKFFDANYDG---RDYDAFEAR 98
DN EFLQW K++ D+ G +Y+ E R
Sbjct: 107 DNLEFLQWLKRYCDSVNGGIMNENYNPVERR 137
>08_02_0270 +
15108178-15108587,15108678-15108774,15109445-15109492,
15109583-15109806,15111367-15111463,15111556-15111651,
15112297-15112544,15112632-15112715,15112787-15113236,
15114880-15115024,15115116-15115217,15115677-15115769,
15117308-15117349,15119085-15119113,15119210-15119251,
15119922-15119997,15120764-15120835,15121208-15121326,
15121428-15121491,15121576-15123009
Length = 1323
Score = 31.1 bits (67), Expect = 0.98
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 424 SSCDFGDRGDGFLSGSGP--RGGRAPVPHGQTFSCATASYAAPP*LASKNFLNHCKNSNY 251
S C D G L GP R A + G+ CAT Y A KNF+ CKN ++
Sbjct: 247 SVCAICDNGGELLCCEGPCMRSFHAKIRDGEDSYCATLGYTKAEVKALKNFV--CKNCDH 304
>03_02_0223 +
6548810-6549025,6549159-6549211,6549457-6549492,
6549786-6549933,6550078-6550185,6550757-6550824,
6551846-6551969,6552067-6552213,6552545-6552805,
6552885-6553169,6553796-6553939,6554565-6554915,
6555405-6555470,6555598-6555768
Length = 725
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 311 CRTSIVGVKEFLEPLQKLKLSWKRPFTSLSMG-TIARMLYGRWSVCSRWWRLHDAT 147
CR V V++ L+ L +S+K T G TI+ +L G ++C+ W L DAT
Sbjct: 354 CRPFKVRVEQVLQSQPSLIISYKLSNTLEFYGYTISDLLGGDAALCNTIWSLRDAT 409
>07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107
Length = 346
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/58 (37%), Positives = 24/58 (41%)
Frame = +3
Query: 36 WFKKFFDANYDGRDYDAFEARCGIPLGSGICDLGVPLCGIVQPPPTRAHRPAPIQHSG 209
W DA + R Y AF R P I D G PL PT A RPA + H G
Sbjct: 38 WSHLLADAGFLRR-YRAFHRRRAPPRLGFIYDAGSPLARFA---PTTAFRPADLDHDG 91
>04_01_0085 -
932461-932464,932656-933002,933387-935041,935084-935882,
936693-936707
Length = 939
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2
Query: 334 FSCATASYAAPP*LASKNF----LNHCKNSNYLGNDPSPVCQWVLLPECCMGAGRC 179
F C T S+A+PP L+ + L+HCK+ + LG+ P+ E + +G C
Sbjct: 374 FDC-TFSFASPPFLSCSSLRFLLLDHCKDKHNLGSAPNSTSAGDTDKETGISSGAC 428
>12_02_0306 + 17307166-17309091
Length = 641
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 433 GLGSSCDFGDRGDGFLSGSGPRGG 362
G G C GDG L G G RGG
Sbjct: 68 GAGVGCSLTGGGDGILCGGGARGG 91
>12_01_1114 + 11899808-11900089,11900278-11900451,11901269-11901604
Length = 263
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 406 DRGDGFLSGSGPRGGRAPVPHGQTFSCATASY 311
D G + G G GG PHGQ ++ A A++
Sbjct: 8 DLASGSVRGDGGSGGGRERPHGQRWTAAAAAH 39
>04_01_0601 + 7918220-7918559,7919082-7919158
Length = 138
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -2
Query: 466 WRSDCCISFPNGLGSSCDFGDRGDGFLSGSGPRGGRAPVPHG 341
WR + G G D GD GDG +G GGR V G
Sbjct: 70 WRGGGEVRAVEGEGEGEDGGDGGDGEQAGGESAGGRRVVGGG 111
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 568 LEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKI 669
LEKE DF K++++E C E+ ++ N ++ K+
Sbjct: 529 LEKENDFLKVKIQELEKDCSELTDE-NLELIYKL 561
>08_02_0391 - 16612929-16613867
Length = 312
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Frame = +3
Query: 9 FQDN-FEFLQWFKKFFDANYDGRDYDAFEARCGIPLGSGICDLGVPLCGIV-QPPPTRAH 182
F+D+ + QW F YDAFE + L G P I P +
Sbjct: 130 FRDSQLKVRQWLGTFPSEEEARAAYDAFEVQVRASLSRGGAGASSPAVAIAPSPARVKIQ 189
Query: 183 RPAPIQHSGNSTH*QT 230
PAP + SG QT
Sbjct: 190 LPAPRRASGRRKKTQT 205
>06_01_1195 +
10280864-10280979,10281024-10281115,10281211-10282156,
10282378-10283075,10283140-10284068
Length = 926
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 469 WWRSDCCISFPNGLGS 422
WWRS +S P G+GS
Sbjct: 625 WWRSSARVSVPKGIGS 640
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,773,487
Number of Sequences: 37544
Number of extensions: 561660
Number of successful extensions: 1911
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1908
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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