Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30457
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 5e-11
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11) 33 0.25
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11) 29 4.0
SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38) 29 4.0
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 29 5.3
SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42) 28 7.0
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09) 28 9.3
SB_25028| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_10935| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44) 28 9.3
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 28 9.3
>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 65.3 bits (152), Expect = 5e-11
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = +3
Query: 6 RFQDNFEFLQWFKKFFDANYDGRDYDAFEARCG 104
RFQDNFEFLQWFKKFFDANY G++Y+A EAR G
Sbjct: 87 RFQDNFEFLQWFKKFFDANYGGQEYNAVEARHG 119
Score = 52.0 bits (119), Expect = 5e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 234 EGSFPR*FEFLQWFKKFFDANYGGAAYDAV 323
+G F FEFLQWFKKFFDANYGG Y+AV
Sbjct: 85 KGRFQDNFEFLQWFKKFFDANYGGQEYNAV 114
Score = 36.7 bits (81), Expect = 0.020
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 211 IVPIDKLVKGRFQDNLSF 264
I+P+DKLVKGRFQDN F
Sbjct: 77 IIPVDKLVKGRFQDNFEF 94
>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
Length = 1491
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 520 DELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQ 642
DELN +INELK D L KE + K +++E +E E +
Sbjct: 606 DELNDRINELKKENDYLAKEIKDFANKRKEMETSYEEKERE 646
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 523 ELNHQINELKATVDGLEKERDFYFGKLRD 609
EL I EL+AT+ G+E+ERD Y +L D
Sbjct: 3415 ELREAIEELRATLKGVEEERDRYENELDD 3443
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 514 VVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQ 663
V+ +LNH ++EL D G L DIE + + +H P ++
Sbjct: 3258 VIRDLNHTVHELVRNATKTANRFDKVKGILNDIETVFFSKDNRHEHPTIK 3307
>SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)
Length = 285
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 517 VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQ 642
VDE N +++E+K VD KE GKL + E++E+
Sbjct: 227 VDETNKEVHEVKGKVDETNKEVHEVKGKLDETNKEVHEVKEK 268
>SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)
Length = 1101
Score = 29.1 bits (62), Expect = 4.0
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 5/157 (3%)
Frame = +1
Query: 37 GLKNFLMLTMMVGITMLLRLAAVSH*VLAFVTWVFHYVASCSLHQREHTDQRPYSIRAIV 216
GLK ++L ++G+T + L AV +AF ++F + S L + P +
Sbjct: 620 GLKGMVVLLPLLGLTWVFGLMAVDEKTIAF-QYIFAILNSLQLASNSCSPGDPLVLERPP 678
Query: 217 PIDKLVKGRFQDNLSFCNGSRNSLTPTMEVRH-----MTQWRTRRSAHGARGLGRPEGRC 381
P R+ N + NSL ++ R +TQ R +AH R
Sbjct: 679 P-------RWSSNSPYSESYYNSLAVVLQRRDGENTGVTQ-LNRLAAHPPFASWRNSEEA 730
Query: 382 R*ETRRPCRQSRS*TPNHWES*YNSQISTS*FVTDKS 492
R T RP +Q RS W++ + +S + V +S
Sbjct: 731 R--TDRPSQQLRS-LNGEWDAPCSGALSAAGVVVTRS 764
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +1
Query: 517 VDELNHQINELKATVDGLEKERDFYFGKLRDIE----VICQEMEEQHN 648
+DE + +I L+ T +GL+KE G LR++E +E+++ HN
Sbjct: 1157 LDEASQKIASLEETRNGLQKEAGDLRGSLREVEKARLEARRELQQLHN 1204
>SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)
Length = 823
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 434 IGKANTTVRSPPVNLSRISQSAKGDRKLWMN 526
+ + T+ +PPVN++ + SA R LW N
Sbjct: 207 VNTSQTSPSAPPVNITAFNTSATSIRVLWSN 237
>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2060
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 6 RFQDNFEFLQWFKKFFDANYDGRDYD 83
+ +DNF +QW K F D Y ++D
Sbjct: 1778 QMKDNFPCMQWTKNFLDNAYSTSEHD 1803
>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
Length = 712
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 508 SKVVDELNHQINELKATVDGLEKERDFYFGKLRDIE 615
+K +DEL I LK + L++ + G+ RD+E
Sbjct: 638 AKQIDELEQHIETLKQQNNSLQRNNSSFEGEKRDLE 673
>SB_25028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 192 ALVGVLSLVEAARCHIMEHPGHKCQNL 112
ALV V+ LV+A+RC I G CQ++
Sbjct: 7 ALVVVVLLVQASRCSITSDIGDVCQDM 33
>SB_10935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +1
Query: 535 QINELKATVDGLEKERDFYFGKLRDIEVICQEME 636
Q+ + A+VD + + + G L D+E +C+ ++
Sbjct: 36 QVQDASASVDAISSQTEVLEGLLLDLEEVCENLD 69
>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
Length = 749
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Frame = -2
Query: 463 RSDCCISFPN---------GLGSSCDFGDRGDGFLSGS 377
R+D C+S PN G+G +CD GDG GS
Sbjct: 509 RADNCVSVPNADQVDTDSDGIGDACDSDTDGDGVSDGS 546
>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 139 FHYVASCSLHQREHTDQRPY 198
F ++ +H R HTD+RPY
Sbjct: 470 FTVISQLVMHNRSHTDERPY 489
>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 592
Score = 27.9 bits (59), Expect = 9.3
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +1
Query: 130 TWVFHYVASCSLHQREHTDQRPYSIRAI 213
TW+FH + C L + + D + Y +++
Sbjct: 403 TWLFHEIGRCHLELKNYQDAKEYGQKSL 430
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,808,554
Number of Sequences: 59808
Number of extensions: 560021
Number of successful extensions: 1893
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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