Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30457
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 66 3e-11
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 52 6e-07
AL031269-2|CAA20332.1| 299|Caenorhabditis elegans Hypothetical ... 46 4e-05
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 32 0.38
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 32 0.38
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 32 0.38
Z70683-2|CAA94592.2| 717|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 30 2.0
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 30 2.0
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 30 2.0
Z93372-3|CAB07545.1| 601|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81097-17|CAF31479.2| 269|Caenorhabditis elegans Hypothetical p... 29 3.5
AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila od... 29 3.5
Z82080-7|CAJ85754.1| 127|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z82080-1|CAB54322.3| 320|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.7
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 28 6.2
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 28 6.2
U64836-4|AAG24059.1| 417|Caenorhabditis elegans Hypothetical pr... 28 6.2
U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical pr... 28 8.1
AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormo... 28 8.1
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/57 (54%), Positives = 36/57 (63%)
Frame = +3
Query: 6 RFQDNFEFLQWFKKFFDANYDGRDYDAFEARCGIPLGSGICDLGVPLCGIVQPPPTR 176
+FQDNFEFLQWFKK FDANYDG +YD +AR G G+ G P G P+R
Sbjct: 103 KFQDNFEFLQWFKKLFDANYDGHEYDPMQAR----NGEGLPTEGGPAAGASAKTPSR 155
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +1
Query: 517 VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPI 657
++E+ Q+ E + LEKERDFYF KLR IEVICQ+ E N +
Sbjct: 240 LEEVTRQLTESDNVIASLEKERDFYFSKLRTIEVICQDNESIGNVEV 286
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = +3
Query: 234 EGSFPR*FEFLQWFKKFFDANYGGAAYD 317
+G F FEFLQWFKK FDANY G YD
Sbjct: 101 KGKFQDNFEFLQWFKKLFDANYDGHEYD 128
Score = 35.9 bits (79), Expect = 0.031
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 181 TDQRPYSIRAIVPIDKLVKGRFQDNLSF 264
T + + ++P+DKL+KG+FQDN F
Sbjct: 83 TTWKNLGVEKVIPVDKLIKGKFQDNFEF 110
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +2
Query: 665 RFLDILYATEDGFAPPEE 718
R L++LY TE+GFAPPE+
Sbjct: 288 RVLEVLYETEEGFAPPED 305
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +1
Query: 517 VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPI 657
++E+ Q+ E + LEKERDFYF KLR IEVICQ+ E N +
Sbjct: 111 LEEVTRQLTESDNVIASLEKERDFYFSKLRTIEVICQDNESIGNVEV 157
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +2
Query: 665 RFLDILYATEDGFAPPEE 718
R L++LY TE+GFAPPE+
Sbjct: 159 RVLEVLYETEEGFAPPED 176
>AL031269-2|CAA20332.1| 299|Caenorhabditis elegans Hypothetical
protein VW02B12L.3 protein.
Length = 299
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +3
Query: 3 SRFQDNFEFLQWFKKFFDANY--DGRDYDAFEARCGIPLGSGICDLGV-PLCGIVQPPPT 173
++FQDN EFLQWF KF++AN + +YDA AR G L + G P+ +P
Sbjct: 98 AKFQDNMEFLQWFYKFYNANLTTEPEEYDAVGARFGEDLPALKGSTGSRPVAAPARPVAA 157
Query: 174 RAHRPAP 194
+P P
Sbjct: 158 APPKPRP 164
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 541 NELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPI 657
+E + T +E ER++Y+ L+ +E + E EE ++ +
Sbjct: 220 DEWETTAKEMETEREYYYSILQRVESLANEAEESGSSTV 258
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 258 EFLQWFKKFFDANY--GGAAYDAV 323
EFLQWF KF++AN YDAV
Sbjct: 105 EFLQWFYKFYNANLTTEPEEYDAV 128
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 32.3 bits (70), Expect = 0.38
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 223 QWVLLPECCMGAGRCALVGGGCT 155
+WV+ P C G G CA GGC+
Sbjct: 149 KWVMTPPMCRGQGLCAADNGGCS 171
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 32.3 bits (70), Expect = 0.38
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 223 QWVLLPECCMGAGRCALVGGGCT 155
+WV+ P C G G CA GGC+
Sbjct: 212 KWVMTPPMCRGQGLCAADNGGCS 234
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 32.3 bits (70), Expect = 0.38
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 223 QWVLLPECCMGAGRCALVGGGCT 155
+WV+ P C G G CA GGC+
Sbjct: 212 KWVMTPPMCRGQGLCAADNGGCS 234
>Z70683-2|CAA94592.2| 717|Caenorhabditis elegans Hypothetical
protein F13B12.3 protein.
Length = 717
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -3
Query: 261 TQIILETTLHQFVNGYYCPNAVWALVGVLSLVEAARC-HIMEHPGHKCQNLVGYRSEP 91
T+ +L+T H F++ CP +V + V++L AA+ + + HP CQ + +R +P
Sbjct: 181 TRAVLDTNYHLFIHTDGCP-SVEEDMEVMALASAAKAKNFLSHPA--CQREIDFRWQP 235
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 484 DKSKCQG*S--KVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEE 639
++ K QG S + VD N +I +L+ ++ E ERD KL+D +EM +
Sbjct: 1866 EEEKRQGESNRQAVDRQNARIRQLRTQLEDTEAERDRLTNKLKDERRRAEEMTD 1919
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 484 DKSKCQG*S--KVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEE 639
++ K QG S + VD N +I +L+ ++ E ERD KL+D +EM +
Sbjct: 1866 EEEKRQGESNRQAVDRQNARIRQLRTQLEDTEAERDRLTNKLKDERRRAEEMTD 1919
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 484 DKSKCQG*S--KVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEE 639
++ K QG S + VD N +I +L+ ++ E ERD KL+D +EM +
Sbjct: 1866 EEEKRQGESNRQAVDRQNARIRQLRTQLEDTEAERDRLTNKLKDERRRAEEMTD 1919
>Z93372-3|CAB07545.1| 601|Caenorhabditis elegans Hypothetical
protein BE10.3 protein.
Length = 601
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 259 SNYLGNDPSPVCQWVLLPECCMGAGRCALVGGGC 158
++ +GND V ++ + + C G+ C ++GG C
Sbjct: 150 NSLIGNDDQLVEEFFGMNDICSGSDECGIIGGRC 183
>Z81097-17|CAF31479.2| 269|Caenorhabditis elegans Hypothetical
protein K07A1.16 protein.
Length = 269
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 33 QWFKKFFDANYDGRDYDAFEARCGIPLGSG-ICDLGVPLCGIVQPP 167
+WF+K+ D YDG A C L SG +C +G+ G+ P
Sbjct: 169 KWFEKYVDERYDGETKLCSIANC---LFSGLLCAIGINYTGMYANP 211
>AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila
odd-skipped-like protein2 protein.
Length = 254
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = +1
Query: 142 HYVASCSL--HQREHTDQRPYS 201
H+ S +L H+R HTD+RPYS
Sbjct: 132 HFTKSYNLLIHERTHTDERPYS 153
>Z82080-7|CAJ85754.1| 127|Caenorhabditis elegans Hypothetical
protein W09G3.1b protein.
Length = 127
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 208 PECCMGAGRCALVGGGCTMPHNGTPRSQMPEPSGI 104
P C + + LV GGC+ P+ T +M E S I
Sbjct: 55 PACFLAGNQRILVAGGCSAPNEHTDSMEMLEISEI 89
>Z82080-1|CAB54322.3| 320|Caenorhabditis elegans Hypothetical
protein W09G3.1a protein.
Length = 320
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 208 PECCMGAGRCALVGGGCTMPHNGTPRSQMPEPSGI 104
P C + + LV GGC+ P+ T +M E S I
Sbjct: 55 PACFLAGNQRILVAGGCSAPNEHTDSMEMLEISEI 89
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -2
Query: 439 PNGLGSSCDFGDRGDGFLSGSGPRGGRAPVPHGQTFSCATASYAAPP 299
P G + G G G G GP+G P P GQ S A PP
Sbjct: 241 PGPAGPAGPDGQSGSGSAGGPGPKG--PPGPAGQPGSDGNPGTAGPP 285
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 596 PK*KSLSFSNPSTVAFNSFI*WFNSSTTFDHPWH 495
P+ ++ P T+AF + I ++ +T +D WH
Sbjct: 1891 PQYRTKESRTPETIAFENTINYYQQATQYDPGWH 1924
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 596 PK*KSLSFSNPSTVAFNSFI*WFNSSTTFDHPWH 495
P+ ++ P T+AF + I ++ +T +D WH
Sbjct: 1891 PQYRTKESRTPETIAFENTINYYQQATQYDPGWH 1924
>U64836-4|AAG24059.1| 417|Caenorhabditis elegans Hypothetical
protein F10G2.3 protein.
Length = 417
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 139 FHYVASCSLHQREHTDQRPYSIRAIVPIDKLVKGRFQDNLSFCNGSRNSLTP 294
+ + ASC+ +R +RP ++ + + QDN SFCN S N L P
Sbjct: 267 YWFGASCT-DERNFICKRPAGLQCVGTPPSVTISPIQDNPSFCN-STNLLAP 316
>U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical
protein W01A11.1 protein.
Length = 452
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 514 VVDELNHQINELKATVDGLEKERDFYFG 597
V+D+L H++ + + LE DFY+G
Sbjct: 60 VIDDLKHRLQNARISHSVLEDSDDFYYG 87
>AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform b protein.
Length = 424
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 219 GYYCPNAVWALVGVLSLVEAARCHIMEHPGHKCQN 115
G Y A A ++S + ++CH P HKC+N
Sbjct: 39 GAYTCRACAAFFRIVS-ISKSKCHFSPRPTHKCRN 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,239,109
Number of Sequences: 27780
Number of extensions: 427619
Number of successful extensions: 1428
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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