Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30456
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   3.1  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    26   7.2  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   9.6  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   9.6  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   9.6  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 146 SPLSASISQANSPPSLLFLTYFPFSITDLASS 51
           +P+ +S+SQAN+P + L     P S+ +L S+
Sbjct: 515 NPIVSSVSQANAPKNALHSMPSPTSLANLPSN 546


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = -1

Query: 724 FSFYHTNNNMN 692
           ++F+HTNNNMN
Sbjct: 318 YTFHHTNNNMN 328


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 170 PIFIAFRISPLSASISQANSPPSL 99
           P F A +  PL + +SQ+N PP L
Sbjct: 266 PSFAAPQAHPLPSHLSQSNVPPQL 289


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 176 PKPIFIAFRISPLSASISQANSPPSLLFLTYFPFSIT 66
           PKP+F A ++ PL+   +     P     T FP++ T
Sbjct: 170 PKPLFSALQVYPLATIFNCVAGLPQGFESTVFPWNKT 206


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 499 REAENPAQWRTIGEAYVYQW 440
           +E ++P +WR++G+A +  W
Sbjct: 662 QELDDPLKWRSLGDAALNAW 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,101
Number of Sequences: 5004
Number of extensions: 59691
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)