Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30456
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0170 + 27178952-27179572,27181631-27181816,27182245-271822...    30   1.9  

>01_06_0170 +
           27178952-27179572,27181631-27181816,27182245-27182274,
           27183323-27183518,27183623-27183714,27183753-27183773,
           27184216-27184248
          Length = 392

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -3

Query: 230 IPISYSNPNQTS*P*AEFPKPIFIAFRISPLSASISQANSPPS 102
           +P++  +P  TS P    PKP  ++F + P SAS+S + S P+
Sbjct: 10  LPLAGLSPATTSFP-GSTPKPGSLSFALRPPSASLSSSASAPA 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,222,947
Number of Sequences: 37544
Number of extensions: 361573
Number of successful extensions: 872
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)