Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30456
         (808 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_27408| Best HMM Match : Methyltransf_7 (HMM E-Value=0.14)           28   7.7  

>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 43  VTYDDARSVIEKGKYVRNNKLGGLFAWEIDADN 141
           V YDD  SV EK  Y++   L G   W +D D+
Sbjct: 325 VGYDDVTSVQEKVNYIKKKSLLGAMFWAMDLDD 357


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 1   AQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKLGGLFAWEIDADN 141
           A+APY ++ +    + YDD  S+  K + ++   L G   W ID D+
Sbjct: 688 AKAPYGYHGS--QWIAYDDVTSLGRKVELIKKENLLGAMFWAIDLDD 732


>SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
 Frame = +1

Query: 1   AQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKLGGLFAWEIDADNGDILNAMNMGLGN 180
           A+   ++ P + D     D R    KG Y      G +F W ++  N  I   M  G G 
Sbjct: 335 ARGEMIFTPVSKDKAK--DIRDAFCKGIY------GRVFVWIVNKINKAIYKPMKPGAGQ 386

Query: 181 SA*G*LV*FGFE--*LIGIKKLC-DFHHSQSKRFFL-YLHDLFSERF 309
           ++ G L  FGFE   +   ++LC ++ +   ++FF+ ++  L  E++
Sbjct: 387 TSIGVLDIFGFENFDINSFEQLCINYANEHLQQFFVKHIFKLEQEQY 433


>SB_27408| Best HMM Match : Methyltransf_7 (HMM E-Value=0.14)
          Length = 238

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 716 LPYQ**YESEPKNTIRALYILNQWAGRFSRTTDNRWVKRVLEWR 585
           LP    YE +P N  + L++  Q    F +T  N + + + E+R
Sbjct: 61  LPIHVIYEDQPVNDFKGLFMRMQGRDEFLKTNFNLYCRTIKEYR 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,815,729
Number of Sequences: 59808
Number of extensions: 436966
Number of successful extensions: 1230
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)