Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30456
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.8  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 712 HTNNNMNQNQKIQFARCIY*IN 647
           H NNN N N    + +  Y IN
Sbjct: 91  HNNNNYNNNNYNNYKKLYYNIN 112


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 161 IAFRISPLSASISQAN 114
           +A R +PL  SISQAN
Sbjct: 146 LASRTNPLDDSISQAN 161


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 161 IAFRISPLSASISQAN 114
           +A R +PL  SISQAN
Sbjct: 141 LASRTNPLDDSISQAN 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,041
Number of Sequences: 438
Number of extensions: 4500
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)