Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30456
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    38   0.010
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si...    36   0.024
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    35   0.073
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si...    33   0.17 
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si...    33   0.22 
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si...    30   1.6  
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si...    29   2.7  
At1g66490.1 68414.m07553 F-box family protein contains weak hit ...    29   4.8  
At3g27820.1 68416.m03470 monodehydroascorbate reductase, putativ...    28   6.3  
At4g00440.1 68417.m00061 expressed protein                             28   8.4  
At1g61890.1 68414.m06982 MATE efflux family protein similar to r...    28   8.4  

>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 40  LVTYDDARSVIEKGKYVRNNKLGGLFAWEIDADN 141
           L+ YDD +SV+ K KY +   L G F+W + AD+
Sbjct: 305 LIGYDDHQSVVAKVKYAKQKGLLGYFSWHVGADD 338


>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 366

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 43  VTYDDARSVIEKGKYVRNNKLGGLFAWEIDADNGDILN 156
           + YDD +S++ K KY +   L G F+W I AD+   L+
Sbjct: 320 IGYDDNQSIVMKVKYAKQRGLLGYFSWHIGADDNSRLS 357


>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 34.7 bits (76), Expect = 0.073
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 43  VTYDDARSVIEKGKYVRNNKLGGLFAWEIDADNGDILN 156
           + YDD +S++ K +Y +   L G F+W + AD+   L+
Sbjct: 322 IGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLS 359


>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 365

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 43  VTYDDARSVIEKGKYVRNNKLGGLFAWEIDAD 138
           + YDD +S++ K KY +   L G F+W + AD
Sbjct: 321 IGYDDNQSIVYKVKYAKFTGLLGYFSWHVGAD 352


>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 362

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 43  VTYDDARSVIEKGKYVRNNKLGGLFAWEIDAD 138
           + YDD +S++ K +Y +   L G F+W + AD
Sbjct: 311 IGYDDNQSIVSKVRYAKLKGLLGYFSWHVGAD 342


>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 398

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 43  VTYDDARSVIEKGKYVRNNKLGGLFAWEIDADNGDILNA 159
           + YD  +S++ K  Y +   L G F+W +  D+   L++
Sbjct: 300 IGYDSEKSIVTKVIYAKQKGLLGYFSWHVGGDDNSELSS 338


>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 261

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 43  VTYDDARSVIEKGKYVRNNKLGGLFAWEIDADNGDILNA 159
           + YD   S++ K  Y +   L G F+W++  D+   L++
Sbjct: 213 IGYDSEESIVTKVIYAKQKGLLGYFSWQVGGDDKSELSS 251


>At1g66490.1 68414.m07553 F-box family protein contains weak hit to
           Pfam PF00646: F-box domain;; contains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain
          Length = 360

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 679 FFGSDSYYYWYGKTKNVIVIFKLVL*VRLKFVWTDDCS 792
           F+GS S+Y++  + K V V+FK       +  WT DCS
Sbjct: 281 FYGSRSHYFFIDEEKKVAVVFK------NEPEWTMDCS 312


>At3g27820.1 68416.m03470 monodehydroascorbate reductase, putative
           similar to cytosolic monodehydroascorbate reductase
           GB:BAA77214 [Oryza sativa]
          Length = 488

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +1

Query: 577 IRGLHSRTRLTQRLSVVRLKRPAH*FNIYSARIVFFGSDSYYYWYGKTK 723
           ++ + S   + Q  SVV +K+P + ++  +  +V     ++ +WYG+ +
Sbjct: 437 VKDIPSAEMVKQSASVVMIKKPLYVWHAATGVVVAASVAAFAFWYGRRR 485


>At4g00440.1 68417.m00061 expressed protein 
          Length = 831

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -3

Query: 506 LDERSRKSCSVANNWRGLCLSVDCYRLXXXXXXXXXXXMTIVI--TMLSLIPPHTKQRNT 333
           LD+  RK  + A NW  +   +DC                +++  T  SL+ P  K   +
Sbjct: 765 LDQIVRKDMARAGNWLDIRCDIDCIGFETSELILNELLEELILNNTEHSLVSPELKTDGS 824

Query: 332 ILIM 321
           ILI+
Sbjct: 825 ILIL 828


>At1g61890.1 68414.m06982 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 501

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +2

Query: 467 CSPLSRIFGFSHPVLPATLHPHHHSTEPK----GVLHCVFQFAVS 589
           C P+S +F FS+P+L A   P   +T       G++  +F +AV+
Sbjct: 140 CLPMSFLFLFSNPILTALGEPEQVATLASVFVYGMIPVIFAYAVN 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,653
Number of Sequences: 28952
Number of extensions: 304218
Number of successful extensions: 747
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)