Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30455
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 155 5e-39
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 154 1e-38
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 79 7e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 61 2e-10
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 33 0.044
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 32 0.077
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.18
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.31
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.41
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.41
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.1
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 6.7
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 8.9
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 25 8.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 155 bits (377), Expect = 5e-39
Identities = 71/84 (84%), Positives = 76/84 (90%)
Frame = +3
Query: 3 SSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQXVSSITASLRFDGALNVDLTEFQ 182
+SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q VSSITASLRF G+LNVDL EFQ
Sbjct: 201 NSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQ 260
Query: 183 TNLVPYPRIHFPLVTYAPVISAEK 254
TNLVPYPRIHFPLVTY+P++SA K
Sbjct: 261 TNLVPYPRIHFPLVTYSPIVSAAK 284
Score = 150 bits (363), Expect = 2e-37
Identities = 63/93 (67%), Positives = 77/93 (82%)
Frame = +2
Query: 251 EAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 430
+A+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++R
Sbjct: 284 KAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRR 343
Query: 431 TIQFVDWCPTGFKVGINYQPPTVVPGATWPRFN 529
TIQFVDWCPTGFK+GI Y+PP VPG+ + N
Sbjct: 344 TIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVN 376
Score = 126 bits (303), Expect = 5e-30
Identities = 57/65 (87%), Positives = 61/65 (93%)
Frame = +1
Query: 508 SDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 687
S +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct: 370 SGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 429
Query: 688 AASRR 702
AA R
Sbjct: 430 AALER 434
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 693 LEKDYEEVGMDS 728
LE+DYEEVG DS
Sbjct: 432 LERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 154 bits (374), Expect = 1e-38
Identities = 75/120 (62%), Positives = 85/120 (70%)
Frame = +3
Query: 6 SDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQXVSSITASLRFDGALNVDLTEFQT 185
+DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q VSSITASLRF+G+LNVDL EFQT
Sbjct: 198 ADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQT 257
Query: 186 NLVPYPRIHFPLVTYAPVISAEKPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVC 365
NLVPYPRIHFPLVTYAP++SA K S P + P A ++A C
Sbjct: 258 NLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP-RAGRYMATC 316
Score = 144 bits (348), Expect = 2e-35
Identities = 61/87 (70%), Positives = 72/87 (82%)
Frame = +2
Query: 251 EAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 430
+A+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KR
Sbjct: 280 KAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKR 339
Query: 431 TIQFVDWCPTGFKVGINYQPPTVVPGA 511
TIQFVDWCPTGFK+GI +PP + G+
Sbjct: 340 TIQFVDWCPTGFKIGICDRPPQHIEGS 366
Score = 127 bits (306), Expect = 2e-30
Identities = 57/65 (87%), Positives = 62/65 (95%)
Frame = +1
Query: 508 SDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 687
S++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct: 366 SEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425
Query: 688 AASRR 702
AA R
Sbjct: 426 AALER 430
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 693 LEKDYEEVGMDS 728
LE+DYEEVG DS
Sbjct: 428 LERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 79.0 bits (186), Expect = 7e-16
Identities = 35/93 (37%), Positives = 55/93 (59%)
Frame = +3
Query: 3 SSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQXVSSITASLRFDGALNVDLTEFQ 182
+SD F +DNEA+ I L I+ P+Y +LN L+ ++ +T S RF G LN DL +
Sbjct: 195 NSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLA 254
Query: 183 TNLVPYPRIHFPLVTYAPVISAEKPTMNSFPSP 281
N+VP+PR+HF +V +AP+ + + + P
Sbjct: 255 VNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVP 287
Score = 66.9 bits (156), Expect = 3e-12
Identities = 29/77 (37%), Positives = 44/77 (57%)
Frame = +2
Query: 263 EQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 442
+ +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + F
Sbjct: 282 QAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYF 341
Query: 443 VDWCPTGFKVGINYQPP 493
V+W P + PP
Sbjct: 342 VEWIPDNVLKAVCSVPP 358
Score = 58.0 bits (134), Expect = 1e-09
Identities = 22/55 (40%), Positives = 38/55 (69%)
Frame = +1
Query: 523 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 687
++ + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 361 LKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 60.9 bits (141), Expect = 2e-10
Identities = 27/78 (34%), Positives = 44/78 (56%)
Frame = +3
Query: 3 SSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQXVSSITASLRFDGALNVDLTEFQ 182
++D ++DN A+ I L + PT+ N+L+ +S+ T +LR+ G +N DL
Sbjct: 198 NADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSII 257
Query: 183 TNLVPYPRIHFPLVTYAP 236
+L+P PR HF L +Y P
Sbjct: 258 ASLIPSPRCHFLLTSYTP 275
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +2
Query: 272 SVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 448
+V ++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350
Query: 449 WCPTGFKVGINYQPPTV 499
W P +V ++ + P +
Sbjct: 351 WGPASIQVALSKKSPYI 367
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 33.1 bits (72), Expect = 0.044
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -3
Query: 197 RHQVSLELGEVHIQSAVESQRSSDRGDXLSDETIQVGVGWALNVEITAADVIDG 36
R + E + H ++ + Q+SSD + +D T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 32.3 bits (70), Expect = 0.077
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 153 ALNVDLTEFQTNLVPYPRIHFPLVT--YAPVISAEKPTMNSFPSPRSQTHASSPPTRW*N 326
A +V++ E +TN +P HFP T AP S EKP S + T+ N
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATTEEVAPA-SEEKPATGPAEESTSTQNVEQASTQNDN 426
Query: 327 ATPV 338
TP+
Sbjct: 427 GTPI 430
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.18
Identities = 24/90 (26%), Positives = 32/90 (35%)
Frame = +3
Query: 237 VISAEKPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLP 416
VI+ P + P PP P + S VV P + RP++P
Sbjct: 509 VITPSVPQPPAAPVVPEAPSVHQPPAA--PVAPEVPSAPQRPAAPVVPEAPSVPQRPAVP 566
Query: 417 SKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 506
P LS V PV+ V + PP P
Sbjct: 567 VVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 26.2 bits (55), Expect = 5.1
Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Frame = +3
Query: 216 PLVTYAPVISAEKPTMNSFPSPRSQTHASSPPTRW*NATPVMA---STWLAVCCTVVTSY 386
P APV+ E P++ P S P R A PV+ S VV
Sbjct: 590 PQPPVAPVVP-EAPSVPQPPVAPVAPEVPSVPQR--PAVPVVPEAPSVPQPPAAPVVPEV 646
Query: 387 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 506
P + RP++P P S PV V + PP P
Sbjct: 647 PSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 30.3 bits (65), Expect = 0.31
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +2
Query: 239 HLCREAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 409
H C++ H L ACFEP N C H K C L + KD N ++
Sbjct: 351 HTCKKRCHSGLC-----GACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.41
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = +3
Query: 234 PVISAEKPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSL 413
PV PT +S +P + T+ ++ + +TPV ++ CT TS P T +
Sbjct: 408 PVTPTVPPTSSS--TPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--TSTPV 463
Query: 414 PSKPSVLSNSSTGVQPVSRSVSTTSHP 494
S P +N +T S TS P
Sbjct: 464 TSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 29.9 bits (64), Expect = 0.41
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +3
Query: 225 TYAPVISAEKPTMNSFP---SPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM 395
T PV S+ +S P +P + T+ ++ + +TPV ++ CT TS P
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYT 564
Query: 396 *TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 488
T P S ++ S++ PV+ + TTS
Sbjct: 565 ST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 25.8 bits (54), Expect = 6.7
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Frame = +3
Query: 183 TNLVPYPRIHFPLVTYAPVISAEKPTMNS--FPSPRSQTHASSPPTRW*NATPVMASTWL 356
T VP PL T S P ++ +P + T+ ++ + +TPV ++
Sbjct: 410 TPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLT 469
Query: 357 AVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 488
CT TS P T + S P +N +T S TS
Sbjct: 470 TTNCTTSTSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.41
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 192 VPYPRIHFPLVTYAPVISAEKPTMNSFPSPRSQTHASSPPTR 317
VP P P V+ P S P N+ PSP S + AS+ P R
Sbjct: 1239 VPAPSSEAPSVS-TPRSSVPSPHSNASPSPTSSSMASAAPAR 1279
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 412 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 269
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +3
Query: 408 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 494
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 389 WVRRHHGTAYSKPCTCHDGG 330
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 405 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 500
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 198 YPRIHFPLVTYAPVISAEKPTMN 266
+PR FP + P++ AE+ T N
Sbjct: 24 FPRFQFPSIVGRPILRAEEKTGN 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,976
Number of Sequences: 5004
Number of extensions: 67224
Number of successful extensions: 279
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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