Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30453
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    28   1.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   1.7  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    25   9.0  

>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 362 LGDKTNKHFRHSCNKVYFTVLLVHLTRR 279
           LGD +N+ +  SC KV   + LVH   R
Sbjct: 77  LGDGSNRDYLDSCRKVLAGMFLVHYANR 104


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
 Frame = +3

Query: 414 TVSVLSSYLRKIYHANKELLLYNEIGLSFHRYL---------LITLVLIIWLYLNSLILL 566
           T S  + YL  I++A  + LL  E+ L F  YL            LV I+   LN + LL
Sbjct: 541 TSSTANRYL--IFYACVDFLLAAEVILRFFAYLPDYRLFFRRYTNLVDIVLAVLNLVTLL 598

Query: 567 *F--KNPPTN*YLSIFIVYSILQYKCIYL 647
               KNP    +LSIF +  I  Y+CI L
Sbjct: 599 PSIRKNPVAFGWLSIFAIARI--YRCILL 625


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 229 QCVRTAIPIGSADKEIFSREYRYW 158
           QC   ++P+ S D+E    + RYW
Sbjct: 320 QCTYESMPVSSKDEEWKGAKRRYW 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,554
Number of Sequences: 5004
Number of extensions: 73526
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)