Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30453
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509...    30   2.3  
01_01_1006 - 7972645-7973811                                           30   2.3  
06_03_0784 - 24557089-24557198,24557296-24560725                       29   3.1  
01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612...    28   7.1  

>03_05_0382 +
           23649597-23649645,23649675-23649735,23650784-23650937,
           23651019-23651149,23651239-23651315,23651439-23651477,
           23651976-23652067,23652140-23652277,23652385-23652549
          Length = 301

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 714 EHYT*YSIYVISLSKLCNADTSTNKCTCTVKWNIQ*KLT 598
           E  T   I  I + K C   TS+  C C + WN+  K++
Sbjct: 52  EDETHEGIKTIRIQKACEFTTSSVLCVCIITWNMNGKMS 90


>01_01_1006 - 7972645-7973811
          Length = 388

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 10  HPHHQSDLKFGSAHSRSFAQDV--CRLLYCKSFLLTLPSFAF 129
           HP H  ++ +   HSR F  D+  C +L C+ F +  P   +
Sbjct: 329 HPEHPGEVAYFFLHSRVFGVDLRACSVLECEFFAMLNPPMRY 370


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 602 NFHCIFHFTVQVHLFVDVSALHNLDKL 682
           N  CIFH  V   LFVD++++ N+  L
Sbjct: 664 NLSCIFHIDVHKDLFVDLASVGNMPYL 690


>01_05_0736 -
           24760576-24760690,24760885-24761108,24761188-24761248,
           24761909-24763992
          Length = 827

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 353 CHLGTYPYNPIYVCKLPFYIHG 418
           C +G   YNP Y C  P  +HG
Sbjct: 136 CGVGHGNYNPSYTCSCPHCLHG 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,918,188
Number of Sequences: 37544
Number of extensions: 375330
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)