Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30453
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)         33   0.33 
SB_10601| Best HMM Match : MFS_1 (HMM E-Value=0.017)                   31   1.0  
SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)                     28   9.5  
SB_58911| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-29)                 28   9.5  
SB_49630| Best HMM Match : UBX (HMM E-Value=3.8)                       28   9.5  
SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   9.5  
SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)                     28   9.5  
SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)                     28   9.5  

>SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)
          Length = 916

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 314 IPYYNYA*SVCLFCHLGTYPYNPIYVCKLPF 406
           +PY  YA ++C  C L  YP  P+Y   +P+
Sbjct: 760 VPYVPYASTLCTLCTLCQYPMYPMYPMPVPY 790



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
 Frame = +2

Query: 314 IPYYNYA*SVCLFCHLGT------YPYNPIYVCKLPF--YIHGFCTL 430
           +PY  YA ++C  C L T      YP  P+Y   +P+  Y    CTL
Sbjct: 810 VPYVPYASTLCTLCTLCTLCQYPMYPMYPMYPMPVPYVPYASTLCTL 856


>SB_10601| Best HMM Match : MFS_1 (HMM E-Value=0.017)
          Length = 541

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/71 (23%), Positives = 35/71 (49%)
 Frame = -3

Query: 214 AIPIGSADKEIFSREYRYWITFFNPRIVKTRMKEALIRSFYSIVTGKHLEQMTLSAQNRI 35
           +IP+ ++ K+ +SR+Y   +TF    + +  ++   I     I+ G+ +E  T +  +  
Sbjct: 218 SIPVITSVKQRYSRKYNADVTFIT-LVSQVEIQSLFIIILLVIIVGEFMESPTFALSDSS 276

Query: 34  LDHFGGEGEAR 2
           + H  GE   R
Sbjct: 277 MLHLLGENRGR 287


>SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
          Length = 317

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 387 MYVNYRSIFTVSVLSSYLRKIYHAN--KELLLYN 482
           +YVNYR +  + + S +L KI +    K L+ YN
Sbjct: 173 LYVNYRPVSVLPIFSKFLEKIMYDRLYKFLIKYN 206


>SB_58911| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-29)
          Length = 598

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = +3

Query: 318 LITTMPKVFVCFVT*ERIPIIPYMYVNYRSIFTVSVLSSYLRKIYHANKELLLYNEIGLS 497
           LI  +    +CF+    + +I  +  +Y   F + ++S  L    HAN   L+Y  +   
Sbjct: 229 LIVIISAYLICFIPAAVVNLIEMLIPSYEIPFWIDIVSMLLVVTNHANNP-LIYGMMNRQ 287

Query: 498 FHRYLLITLV 527
           + R  +  ++
Sbjct: 288 YRRAFIAVIL 297


>SB_49630| Best HMM Match : UBX (HMM E-Value=3.8)
          Length = 215

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 111 ASFIRVF-TIRGLKNVIQYLYSRLKIS 188
           AS  R F TI+ L+NV QY+YSR  I+
Sbjct: 48  ASLKREFGTIQSLENVYQYIYSRHNIN 74


>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 979

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 111 ASFIRVF-TIRGLKNVIQYLYSRLKIS 188
           AS  R F TI+ L+NV QY+YSR  I+
Sbjct: 850 ASLKREFGTIQSLENVYQYIYSRHNIN 876


>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
          Length = 875

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 541 NHIIKTRVISKYL*KLNPISLYSKSSLFAWYIFRK---YDESTETVNI 407
           NHI++++  S     L P+ LY+ S+ +A   F+K   YDE    VN+
Sbjct: 447 NHILESKEPSMMEYVLYPLDLYNDSAHYALTEFKKQFLYDEVEAEVNL 494


>SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
          Length = 243

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 387 MYVNYRSIFTVSVLSSYLRKIYHAN--KELLLYN 482
           +YVNYR +  + + S +L KI +    K L+ YN
Sbjct: 99  LYVNYRPVSVLPIFSKFLEKIMYDRLYKFLIKYN 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,224,281
Number of Sequences: 59808
Number of extensions: 491929
Number of successful extensions: 934
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)