Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30453
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine re...    29   2.7  
AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine re...    29   2.7  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform a protein.
          Length = 230

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 593 IFVN--FHCIFHFTVQVHLFVDVSALHNLDKLITYIEYYV 706
           IFV   FHC+  F V VH+FV    L    K +  +++Y+
Sbjct: 16  IFVTMAFHCLTIFEVPVHIFVGYLILFKTPKRMGNVKWYM 55


>AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform b protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 593 IFVN--FHCIFHFTVQVHLFVDVSALHNLDKLITYIEYYV 706
           IFV   FHC+  F V VH+FV    L    K +  +++Y+
Sbjct: 16  IFVTMAFHCLTIFEVPVHIFVGYLILFKTPKRMGNVKWYM 55


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 129 FTIRGLKNVIQYLYSRLKISLSADPIGIAVR 221
           F+I     +  Y+Y+RLK SLS DP    +R
Sbjct: 119 FSITFSNQIYGYIYNRLKYSLSIDPSKFGLR 149


>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 517 LPLS*LYGYI*TV*FYCSLKI-HLQINICQFSLYIPFYSTSAFI 645
           +PLS L+ +  +V FY   KI H   + C FSL + +YS++ F+
Sbjct: 30  VPLSSLF-FSASVAFYRKRKIFHPMFSFCFFSLLLLYYSSTTFL 72


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 382 HICM*ITVLYSRFLYSRHIYGKYTTRIKSFYC 477
           HIC  IT  ++ F   ++I+G Y+  +  + C
Sbjct: 9   HICAFITWQFANFFAGQNIFGIYSNNVSKWKC 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,655,693
Number of Sequences: 27780
Number of extensions: 388445
Number of successful extensions: 876
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)