Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30453
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    26   0.33 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   1.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   7.2  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 120 IRVFTIRGLKNVIQYLYSRLKISL-SADPIGIAVRTH 227
           +RV+TI GLK  I+++ +   I+L SA P  I  + +
Sbjct: 147 LRVYTISGLKRPIRFILAAWLIALISAIPFAIYTKVN 183


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 602 NFHCIFHFTVQVHLFVDVSALHNLDKLITYIEYYV*CSTFF 724
           N   +FH  +Q   FVDV+   N   L  +      CS++F
Sbjct: 21  NMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYF 61


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 276 LQRIFGWNLHIGILFINVYVP 214
           LQ  F    H G   I VYVP
Sbjct: 234 LQVSFNLQRHTGYFLIQVYVP 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,931
Number of Sequences: 438
Number of extensions: 5513
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)