Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30452
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    28   1.2  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    27   2.1  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   3.7  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   8.5  

>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -2

Query: 130 GLLVSPAKDARASATAFSMKWSDIRRDSCSLNTLFINAILAD 5
           G + SPA  A  + T F  K  D      S NTLF+NA   D
Sbjct: 30  GCIASPA--AEVAETVFDSKPVDFMTFKDSTNTLFLNAEFGD 69


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 154 IPALGSWCGLLVSPAKDARASATAFSMKWS 65
           I  +GS+ GLL SP     A + AF   WS
Sbjct: 198 ILTMGSFAGLLPSPYLSTYAGSKAFLSNWS 227


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 276 QCSRQEVVAHYSARALDDAMREQMAREWATRER 374
           Q   Q+ + H  A  LDDA  ++ ARE  TRER
Sbjct: 177 QSGTQDFIGHAMALYLDDAYLKKPARE--TRER 207


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 97  ASATAFSMKWSDIRRDSCSLNTLFINAIL 11
           ASA A S  W+ +  +S +   L ++A+L
Sbjct: 282 ASANAISTPWNQVNSNSANDGPLIVSAVL 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,782
Number of Sequences: 5004
Number of extensions: 31663
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)