Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30452
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318... 31 0.93
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 31 0.93
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 30 1.2
08_02_1281 - 25849918-25851099 30 1.6
06_01_1085 - 8886868-8887556,8887629-8888574 29 2.8
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 29 3.7
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548... 28 5.0
02_05_1019 - 33549576-33550247,33550885-33551121,33551206-335513... 28 6.5
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 27 8.7
01_06_0865 - 32567145-32568003,32568123-32568846,32569067-32569151 27 8.7
01_06_0784 + 31979670-31979976,31980092-31980337,31980428-319805... 27 8.7
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000... 27 8.7
>12_01_0403 -
3185897-3186931,3187200-3187311,3187425-3187735,
3188112-3188324,3188834-3189052
Length = 629
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 376 KRLRPVAEYYARSWRDLNASFGRRGWRR 459
KRL+ YY+ WR A F + WRR
Sbjct: 489 KRLQHAFRYYSHQWRSWGACFVQGAWRR 516
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 420 SPAPRVVLRHRTKTLHAPWWPILAPSVPASRRLVPEPS 307
+PAP R R + H P + AP PAS +PEPS
Sbjct: 45 APAPAASFRRRDRWFHLP---LHAPPPPASAEHLPEPS 79
>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 264 CASGQCSRQ-EVVAHYSARALDDAMREQMAREW 359
CA+G+ R EVVA L D +R +MA EW
Sbjct: 1197 CAAGRLERDVEVVARGQGVGLSDRLRARMASEW 1229
>08_02_1281 - 25849918-25851099
Length = 393
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 381 TLHAPWWPILAPSVPASRRLVPEPSSALRL 292
+L P WP+ +P+ P++R L+PE S RL
Sbjct: 3 SLLLPPWPLPSPASPSARLLLPELHSPARL 32
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 285 RQEVVAHYSARALDD--AMREQMAREWATREREASSSGGGV 401
R VV SAR +D A+RE+ + R R AS GGGV
Sbjct: 140 RVAVVHLLSARRVDSFRALREEEVASFVNRIRAASGGGGGV 180
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 133 TRTP-ALVSLRLGSCWKRTKVGRCWN 207
T+ P + VSLR+G C R K GRC++
Sbjct: 513 TKLPFSFVSLRIGMCKDRLKKGRCFS 538
>11_01_0671 -
5479240-5479286,5480399-5480588,5480669-5480824,
5481005-5481931
Length = 439
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 115 ETRATHTRTPALVSLRLGSCWKR 183
E TH P L++LRL CW R
Sbjct: 212 EHHRTHIYAPNLITLRLDDCWGR 234
>02_05_1019 -
33549576-33550247,33550885-33551121,33551206-33551317,
33551998-33552215,33553084-33553194
Length = 449
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 376 KRLRPVAEYYARSWRDLNASFGRRGWRR 459
KRL+ YY+ WR + F + WRR
Sbjct: 351 KRLQHTFRYYSHHWRTWASCFIQAAWRR 378
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 391 VAEYYARSWRDLNASFGRRG 450
V EY AR WRD A RRG
Sbjct: 428 VKEYMARRWRDARAEEERRG 447
>01_06_0865 - 32567145-32568003,32568123-32568846,32569067-32569151
Length = 555
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 264 CASGQCSRQ-EVVAHYSARALDDAMREQMAREW 359
CA+G+ R EVVA L + +R +MA EW
Sbjct: 187 CAAGRRERDVEVVARGQGVGLSERLRGRMASEW 219
>01_06_0784 +
31979670-31979976,31980092-31980337,31980428-31980544,
31980638-31980792,31980910-31980984,31981080-31981346,
31981436-31981756,31981858-31982271
Length = 633
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 66 DHFIEKAVAEA--RASFAGDTSNPHQDPSAGIAAFRFMLEANKGRTMLEFQE 215
DH EKA EA + A D + H + + A M + GRT+L+F +
Sbjct: 529 DHAREKAKKEAPPAPAMANDAAEHHHQQAGEVDAPCKMTGSPNGRTLLDFMD 580
>01_05_0544 +
23098921-23098953,23099209-23099272,23099942-23100084,
23100246-23100719,23100950-23101123,23101230-23101367,
23101489-23101589,23101910-23102183
Length = 466
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 60 ISDHFIEKAVAEARASFAGDTSNP--HQDP 143
I D F++KA A+ S GD NP HQ P
Sbjct: 312 IYDAFVKKATEMAKKSVVGDPFNPRVHQGP 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,650
Number of Sequences: 37544
Number of extensions: 298716
Number of successful extensions: 1276
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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