Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30452
(602 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 1e-41
SB_15141| Best HMM Match : RVT_1 (HMM E-Value=1.1) 29 2.9
SB_1136| Best HMM Match : HC2 (HMM E-Value=4.2) 29 2.9
SB_57871| Best HMM Match : RVT_1 (HMM E-Value=0.0029) 29 3.8
SB_45859| Best HMM Match : RVT_1 (HMM E-Value=0.0014) 29 3.8
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) 29 3.8
SB_22668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14) 29 3.8
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 29 3.8
SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08) 29 3.8
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07) 29 3.8
SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097) 29 3.8
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07) 29 3.8
SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_56521| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_43452| Best HMM Match : RVT_1 (HMM E-Value=0.0056) 28 6.7
SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 6.7
SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12) 28 6.7
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14) 28 6.7
SB_17286| Best HMM Match : RVT_1 (HMM E-Value=1.5e-05) 27 8.8
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 27 8.8
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 166 bits (404), Expect = 1e-41
Identities = 92/177 (51%), Positives = 111/177 (62%), Gaps = 10/177 (5%)
Frame = +3
Query: 6 SAKIALMNSVFNEHESRRISDHFIEKAVAEA----------RASFAGDTSNPHQDPSAGI 155
+AKIALMNSVFNEH SR+I+D FI++AV EA R + + +PH +P+ G+
Sbjct: 233 AAKIALMNSVFNEHPSRKITDDFIDQAVHEAQGTEAKVAAKRRTMSLKPQDPH-NPNTGV 291
Query: 156 AAFRFMLEANKGRTMLEFQELMTVFQLLHWNGS*ERCASGQCSRQEVVAHYSARALDDAM 335
AFRFMLEANKGRTMLEFQELMT+FQLLHWNGS + CSRQEV AHY+ R +DD M
Sbjct: 292 GAFRFMLEANKGRTMLEFQELMTIFQLLHWNGSLKAMRDRNCSRQEVFAHYNERIIDDDM 351
Query: 336 REQMAREWATREREASSSGGGVXXXXXXXXXXXXXXXXXXXXXXXFPKEKRDILQLA 506
R QMA +W +RE+E G+ FPKEKRDIL LA
Sbjct: 352 RSQMALDWISREQEQP----GLIAEELSRATNELEQCRLSGRELRFPKEKRDILMLA 404
>SB_15141| Best HMM Match : RVT_1 (HMM E-Value=1.1)
Length = 402
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 295 TWKTVTDAWNGYHSVPLSSSDRHLTTFITPFGRW 328
>SB_1136| Best HMM Match : HC2 (HMM E-Value=4.2)
Length = 551
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 212 LEFQHRPTFV--RFQHEPKRSDTSAGVLVWVARVSGEGR 102
+ Q P +V R + K +D++ VLVW+ARVS GR
Sbjct: 152 IRIQTNPCYVYGRRKRIEKYTDSNESVLVWMARVSVYGR 190
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 182 RFQHEPKRSDTSAGVLVWVARVSGEGR 102
R + K +D++ VLVW+ARVS GR
Sbjct: 190 RRKRTEKYTDSNESVLVWMARVSVYGR 216
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 164 KRSDTSAGVLVWVARVSGEGR 102
K +D++ VLVW+ARVS GR
Sbjct: 79 KYTDSNESVLVWMARVSVYGR 99
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 164 KRSDTSAGVLVWVARVSGEGR 102
K +D++ VLVW+ARVS GR
Sbjct: 105 KYTDSNKSVLVWMARVSVYGR 125
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 164 KRSDTSAGVLVWVARVSGEGR 102
K +D++ VLVW+ARVS GR
Sbjct: 248 KYTDSNESVLVWMARVSVYGR 268
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 164 KRSDTSAGVLVWVARVSGEGR 102
K +D++ VLVW+ARVS GR
Sbjct: 300 KYTDSNESVLVWMARVSVYGR 320
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 164 KRSDTSAGVLVWVARVSGEGR 102
K +D++ VLVW+ARVS GR
Sbjct: 326 KYTDSNESVLVWMARVSVYGR 346
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 164 KRSDTSAGVLVWVARVSGEGR 102
K +D++ VLVW+ARVS GR
Sbjct: 365 KYTDSNESVLVWMARVSVYGR 385
>SB_57871| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
Length = 195
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 45 TWKTVTDAWNGYHSVPLRSSDRHLTTFITLFGRW 78
>SB_45859| Best HMM Match : RVT_1 (HMM E-Value=0.0014)
Length = 471
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 352 TWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 385
>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
Length = 1590
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 700 TWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 733
>SB_22668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 237 TWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 270
>SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14)
Length = 1447
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 668 TWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 701
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 405 TWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 438
>SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08)
Length = 1201
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 702 TWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 735
>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
Length = 1253
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 688 TWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 721
>SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097)
Length = 812
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 760 TWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 793
>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
Length = 493
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 257 TWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 290
>SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1552
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L I G W
Sbjct: 683 TWKTVTDAWNGYHSVPLRSSDRHLTTFITPFGRW 716
>SB_56521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 120 TSNPHQDPSAGIAAFRFMLEANKGRT-MLEFQELMTVF 230
T+ H D SA +RF LE + RT +L+F L VF
Sbjct: 80 TAGSHLDVSATHVIYRFSLERKRKRTQLLDFLALALVF 117
>SB_43452| Best HMM Match : RVT_1 (HMM E-Value=0.0056)
Length = 437
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L + G W
Sbjct: 211 TWKTVTDAWNGYHSVPLRSSDRHLTTFLTPFGRW 244
>SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 913
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL S +L I G W
Sbjct: 45 TWKTVTDAWNGYHSVPLRLSDRHLTTFITPFGRW 78
>SB_31154| Best HMM Match : rve (HMM E-Value=2.5e-12)
Length = 1067
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL S +L I G W
Sbjct: 626 TWKTVTDAWNGYHSVPLRLSDRHLTTFITPFGRW 659
>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
Length = 865
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W TV +WN PL +S +L + G W
Sbjct: 149 TWKTVTDAWNGYHSVPLRSSDRHLTTFLTPFGRW 182
>SB_17286| Best HMM Match : RVT_1 (HMM E-Value=1.5e-05)
Length = 288
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 235 SWNTVISSWNSSIVRPLFASSMNLNAAIPALGSW 134
+W T+ +WN PL +S +L I G W
Sbjct: 105 TWKTLTDAWNGYHSVPLRSSDRHLTTFITPFGRW 138
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -3
Query: 423 ISPAPRVVLRHRT-KTLHAPWWPILAPSVPASRRLVPEPSSALRLPAASIXRSRIALTT 250
ISPA V+ H+ K A P+ P P+S P P+ + PA+S+ + LTT
Sbjct: 73 ISPAEDVMAAHQEPKPTSAIDQPL--PPPPSSPSTGPTPAPPVTAPASSVNKGGKVLTT 129
>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2141
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 338 PHRVV*CPSRVVRYDFLPRALXARASLSRP-VPVEQLEYRHQLLEFQHRPTFV 183
P + CP+ VR D + + LS+P V Q+E H+ +H PTFV
Sbjct: 845 PRGKINCPAANVRCDKCTKV--GTSLLSKPNTRVSQVEDAHEGEVLEHNPTFV 895
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,628,139
Number of Sequences: 59808
Number of extensions: 275364
Number of successful extensions: 946
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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