Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30452
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    29   1.9  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    29   1.9  
U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protei...    29   2.6  
AC098856-5|AAR12980.1|  263|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9b protein.
          Length = 908

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/67 (28%), Positives = 25/67 (37%)
 Frame = -2

Query: 211  WNSSIVRPLFASSMNLNAAIPALGSWCGLLVSPAKDARASATAFSMKWSDIRRDSCSLNT 32
            W  SIV     + M L+        W G L   AK  R  A A    W D+   + S + 
Sbjct: 831  WTKSIVY----AKMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADA 886

Query: 31   LFINAIL 11
            +    IL
Sbjct: 887  ILARLIL 893


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9a protein.
          Length = 1019

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/67 (28%), Positives = 25/67 (37%)
 Frame = -2

Query: 211  WNSSIVRPLFASSMNLNAAIPALGSWCGLLVSPAKDARASATAFSMKWSDIRRDSCSLNT 32
            W  SIV     + M L+        W G L   AK  R  A A    W D+   + S + 
Sbjct: 942  WTKSIVY----AKMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADA 997

Query: 31   LFINAIL 11
            +    IL
Sbjct: 998  ILARLIL 1004


>U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protein
           27 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 282 SRQEVVAHYSARALDDAMREQMAREWATREREASSSGGGV 401
           S+ E +   S +ALD++M+E    E  +R REA S  G +
Sbjct: 80  SKLEKMRQKSKKALDESMKEHSTMEDLSRAREALSEMGNM 119


>AC098856-5|AAR12980.1|  263|Caenorhabditis elegans Hypothetical
           protein Y37F4.5 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 187 LFASSMNLNAAIPALGSWCGLLVSPAKDARASA 89
           +  SS+NL++ +P  GSW G   + + D  A+A
Sbjct: 134 IMGSSLNLDSMLPIAGSWMGTQKTRSIDLVATA 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,087,375
Number of Sequences: 27780
Number of extensions: 188901
Number of successful extensions: 549
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)