Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30452
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel...    30   1.4  
At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel...    29   3.1  
At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel...    29   3.1  
At4g01010.1 68417.m00136 cyclic nucleotide-regulated ion channel...    28   5.5  
At5g15060.1 68418.m01765 hypothetical protein                          27   9.6  
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel...    27   9.6  
At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel...    27   9.6  
At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel...    27   9.6  

>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
           putative (CNGC18) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 706

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 376 KRLRPVAEYYARSWRDLNASFGRRGWRRASFASLKK 483
           K+L+    YY+  WR   A F +  WRR     L K
Sbjct: 571 KKLQHAFRYYSHQWRAWGACFVQSAWRRYKRRKLAK 606


>At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC1) almost identical
           to cyclic nucleotide-regulated ion channel 1 pir:T51354,
           GI:11357236 from [Arabidopsis thaliana]
          Length = 716

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 376 KRLRPVAEYYARSWRDLNASFGRRGWRR 459
           K+LR    YY++ W+   A F +  WRR
Sbjct: 608 KQLRHTFRYYSQQWKTWAACFIQAAWRR 635


>At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel,
           putative (CNGC14) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (GI:4581205)
           [Arabidopsis thaliana]
          Length = 726

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 376 KRLRPVAEYYARSWRDLNASFGRRGWRRASFASLKK 483
           K+L+    YY+  WR   A F +  WRR     L K
Sbjct: 603 KKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAK 638


>At4g01010.1 68417.m00136 cyclic nucleotide-regulated ion channel,
           putative (CNGC13) similar to CaM-regulated potassium ion
           channel (ACBK1) GI:8515883 from [Arabidopsis thaliana]
          Length = 696

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 376 KRLRPVAEYYARSWRDLNASFGRRGWRR 459
           K+L+    +Y+  WR   ASF +  WRR
Sbjct: 596 KQLQHTFRFYSVQWRTWGASFIQAAWRR 623


>At5g15060.1 68418.m01765 hypothetical protein 
          Length = 245

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +3

Query: 48  ESRRISDHFIEKAVAEARASFAGDTSNPHQDPSAGIAAFRFMLEANKGRTMLEF 209
           E RR  D           ASF    +N   DPS+ +  FR  L AN     +EF
Sbjct: 96  ELRRTRDQITAAFFNPTAASFFNSAANNFLDPSSAVNPFR-NLTANNDDGTIEF 148


>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
           putative (CNGC16) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 705

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 376 KRLRPVAEYYARSWRDLNASFGRRGWRR 459
           K+L+    YY+  WR     F +  WRR
Sbjct: 579 KKLQHAFRYYSHQWRAWGTCFIQAAWRR 606


>At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel,
           putative (CNGC15) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 376 KRLRPVAEYYARSWRDLNASFGRRGWRR 459
           K+LR    +Y+  WR   A F +  WRR
Sbjct: 593 KQLRHKFRFYSHQWRTWAACFIQAAWRR 620


>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel
           (CNGC10) (ACBK1) almost identical to CaM-regulated
           potassium ion channel (ACBK1) GI:8515883 from
           [Arabidopsis thaliana]; contains Pfam domain, PF00520:
           Ion transport protein
          Length = 706

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 376 KRLRPVAEYYARSWRDLNASFGRRGWRRASFASLKK 483
           K+L+    +Y+  WR  + SF +  WRR     L K
Sbjct: 590 KQLQHTFRFYSVQWRTWSVSFIQAAWRRYCRRKLAK 625


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,756,892
Number of Sequences: 28952
Number of extensions: 187585
Number of successful extensions: 649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)