Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30451
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   2.0  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    27   4.7  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   4.7  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    26   6.1  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 24/81 (29%), Positives = 41/81 (50%)
 Frame = +2

Query: 110 ESSITYSSYKSAERSLDSSPSLKILNRRPISSNYVANNKVNLLSSAAPSLTHAACTRHR* 289
           E SI+ SS  S++  L SS    + +    S   V++   +  SSAAP+ T ++      
Sbjct: 156 EVSISSSSLSSSD-PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSS 214

Query: 290 IRSCTSST*NTRATCQTSRSL 352
           + S +SS  ++ ++  TS SL
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSL 235


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 110 ESSITYS-SYKSAERSLDSSPSLKILNRRPISSNYVANNKVNL 235
           +SS +YS + +SAERS+ SSPS     RR  +     N  +++
Sbjct: 113 DSSPSYSGALRSAERSISSSPSTIEARRRKSARGNGLNGAIDV 155


>SPCC1322.12c |bub1||serine/threonine protein kinase
            Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 114  LLSPTLHTNQQNVPWT 161
            LL+PTLH +++N+P T
Sbjct: 993  LLNPTLHVSEENLPMT 1008


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 101 ILPESSITYSSYKSAERSLDSSPSLKILNRRPISSNYVA 217
           ++PESSI + +Y++ +R L  S S +  N  P+ S Y+A
Sbjct: 199 VMPESSIKFGTYEAMKRVLGISSSSE--NHSPLYS-YLA 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,457,511
Number of Sequences: 5004
Number of extensions: 67539
Number of successful extensions: 220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)