Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30451
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    30   2.1  
01_01_0493 + 3644587-3644917,3645150-3645233,3645584-3645798,364...    30   2.1  
07_03_0768 + 21368058-21368624                                         30   2.8  
10_08_0406 - 17688069-17690643,17691065-17691132                       28   8.6  

>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
            25541673-25541751,25542151-25542238,25542330-25542600,
            25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +2

Query: 107  PESSITYSSYKSAERSLDSSPSLKILNRRPISSNYVA 217
            P+S +  SS KSA++S  S PS K++  RP S+  VA
Sbjct: 1500 PKSGVDNSSIKSAQKSEPSDPS-KVVYVRPKSNQLVA 1535


>01_01_0493 +
           3644587-3644917,3645150-3645233,3645584-3645798,
           3645975-3646022,3646958-3647094,3647267-3647326,
           3648166-3648172,3648262-3648448,3648619-3648728,
           3648841-3648959,3649284-3649362
          Length = 458

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = +1

Query: 604 RVGRGFHNRLVGH-IIKGGG----VAITGQEQALIYNKDNVEQPQRQAGFIGEITMLQ 762
           RV RGF+ +L GH ++KG G    +A T   Q + Y ++  EQP    G IG  T  Q
Sbjct: 100 RVVRGFYPQLSGHKLVKGLGMGSTLAATFCSQKVAYAEEVAEQPSE--GLIGPSTKHQ 155


>07_03_0768 + 21368058-21368624
          Length = 188

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 301 TTPDSAMPCTRCMRQTRCGRTEQIHFVVRYVVAGDR 194
           T PD AM          C R  ++H    YVVAG R
Sbjct: 106 TPPDGAMEIAEVCDDCACARAMEVHQQEEYVVAGRR 141


>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -2

Query: 444 ERYFFWVIINSI*EKWMISRMIMELHPQAHRKLLEVWQVALVFYVLEVQLL 292
           E + FW +   +   W I RM+   H  AHR  L  W   L F V+ V+ L
Sbjct: 548 ETHEFWTV--HVFSSWNIVRMVCTYHRAAHRPWLR-W---LCFLVIRVRFL 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,823,949
Number of Sequences: 37544
Number of extensions: 450845
Number of successful extensions: 1227
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)