Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30451
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    26   0.53 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.6  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 131 SYKSAERSLDSSPSLKILNRRPISSNYVANNKVN 232
           S    ER     P + I N  P+S+NY  NN  N
Sbjct: 67  SRNRTERERSKEPKI-ISNNNPLSNNYNYNNNYN 99


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 111 NLLSPTLHTNQQNVPWTPVHR*R 179
           N+LSP++H N  +  W   HR R
Sbjct: 363 NILSPSIHDNICSNGWICEHRWR 385


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 98  PILPESSITYSSYKSAERSLDSSPSLK 178
           P++PE S+TY   +    S++    LK
Sbjct: 655 PVIPEQSLTYQDQQYQVVSVEQYQQLK 681


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 185 NRRPISSNYVANN 223
           N RPISS+ +ANN
Sbjct: 58  NVRPISSHQIANN 70


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 122  TYSSYKSAERSLDSSPSLKILNRR 193
            TY  Y ++   + SSPS  +L+ R
Sbjct: 1470 TYQLYLTSHNKIGSSPSSPVLSVR 1493


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 122  TYSSYKSAERSLDSSPSLKILNRR 193
            TY  Y ++   + SSPS  +L+ R
Sbjct: 1466 TYQLYLTSHNKIGSSPSSPVLSVR 1489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,801
Number of Sequences: 438
Number of extensions: 5043
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)