Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30451
         (880 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR ...    29   5.4  
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont...    28   9.5  

>At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 906

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 292 DSAMPCTRCMRQTRCGRTEQIHFVVRYVVAGDRSSIENLQR-WT 164
           + +MPC R +    C + +Q+   ++YV       IE ++R WT
Sbjct: 837 EGSMPCLRTLTIDNCKKLKQLPDGLKYVTCLKELKIERMKREWT 880


>At5g10660.1 68418.m01234 calmodulin-binding protein-related
           contains weak similarity to calmodulin-binding proteins
          Length = 407

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 107 PESSITYSSYKSAERSLDSSPSLKILNRRP 196
           P SS+T  S  SA RSL++SP+   L  +P
Sbjct: 90  PPSSLTSPSTSSAHRSLNTSPAHPHLRDKP 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,199,949
Number of Sequences: 28952
Number of extensions: 358560
Number of successful extensions: 1014
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)