Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30450
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 165 5e-42
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 165 5e-42
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 165 5e-42
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 97 2e-21
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.72
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 6.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.8
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 8.8
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 165 bits (402), Expect = 5e-42
Identities = 80/85 (94%), Positives = 83/85 (97%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN 255
FQS+AIGALQEA EAYLV LFEDTN
Sbjct: 85 FQSSAIGALQEAVEAYLVSLFEDTN 109
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 110 LCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 165 bits (402), Expect = 5e-42
Identities = 80/85 (94%), Positives = 83/85 (97%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN 255
FQS+AIGALQEA EAYLV LFEDTN
Sbjct: 85 FQSSAIGALQEAVEAYLVSLFEDTN 109
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 110 LCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 165 bits (402), Expect = 5e-42
Identities = 80/85 (94%), Positives = 83/85 (97%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN 255
FQS+AIGALQEA EAYLV LFEDTN
Sbjct: 85 FQSSAIGALQEAVEAYLVSLFEDTN 109
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 110 LCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 97.1 bits (231), Expect = 2e-21
Identities = 56/103 (54%), Positives = 73/103 (70%), Gaps = 11/103 (10%)
Frame = +1
Query: 4 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQD--- 162
A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61
Query: 163 -FKTD--LRFQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
F TD LR+QS A+ LQEA+EA+LV LFEDTN C + V
Sbjct: 62 NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRV 104
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRG 326
LCAIHAKRVTIM +D+QLARRIRG
Sbjct: 96 LCAIHAKRVTIMQRDMQLARRIRG 119
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.72
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 34 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAA 195
+ + HR + +L E + +++ S LLI P Q +RE+A DF +F +
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566
Query: 196 IGALQEASEAYLVGLFE 246
+ A E EAY+ L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 70 ALREIRRYQKSTELLIRKLPFQR 138
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 374 RITSNQNYN*TNLSTFTTDSSSKLNILRHDGHTFGVNSTQLVSSNKPTR*ASLAS 210
R T++ NYN ++ S+ + SSS + + +ST +S PT +SL S
Sbjct: 58 RATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTS-SSLTS 111
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 213 LLESSDGGRLETQISFEILSD 151
L + DGG+LE Q+ +++L D
Sbjct: 72 LFTTDDGGKLELQVYYQLLVD 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,255
Number of Sequences: 5004
Number of extensions: 56172
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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