Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30450
         (755 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.     175   2e-45
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.       167   2e-43
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   5.8  

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score =  175 bits (425), Expect = 2e-45
 Identities = 87/94 (92%), Positives = 88/94 (93%), Gaps = 1/94 (1%)
 Frame = +1

Query: 1   AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
           AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25  AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84

Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
           FQSAAIGALQEASEAYLVGLFEDTN C +    V
Sbjct: 85  FQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 118



 Score = 58.4 bits (135), Expect = 2e-10
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
           LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score =  167 bits (407), Expect = 2e-43
 Identities = 81/85 (95%), Positives = 84/85 (98%)
 Frame = +1

Query: 1   AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
           AARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 23  AARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 82

Query: 181 FQSAAIGALQEASEAYLVGLFEDTN 255
           FQS+A+ ALQEASEAYLVGLFEDTN
Sbjct: 83  FQSSAVMALQEASEAYLVGLFEDTN 107


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 192 GRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTNFTKGHCTRA 55
           G + T  +F +LSD +   L    TD QLS + +  N       +A
Sbjct: 803 GTITTGSAFVLLSDKTSLRLITTTTDHQLSEVELRPNLPANFVVKA 848


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,499
Number of Sequences: 2352
Number of extensions: 12768
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78170964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)