Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30450
(755 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65360.1 68418.m08221 histone H3 identical to histone H3 from... 165 2e-41
At5g10400.1 68418.m01206 histone H3 identical to several histone... 165 2e-41
At5g10390.1 68418.m01205 histone H3 identical to histone H3 from... 165 2e-41
At3g27360.1 68416.m03421 histone H3 identical to histone H3 from... 165 2e-41
At1g09200.1 68414.m01027 histone H3 identical to histone H3 from... 165 2e-41
At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2, M... 164 5e-41
At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,... 164 5e-41
At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,... 164 5e-41
At1g75600.1 68414.m08784 histone H3.2, putative strong similarit... 163 1e-40
At5g65350.1 68418.m08220 histone H3 nearly identical to histone ... 162 3e-40
At1g13370.1 68414.m01554 histone H3, putative strong similarity ... 160 1e-39
At1g19890.1 68414.m02494 histone H3, putative similar to histone... 144 7e-35
At5g12910.1 68418.m01481 histone H3, putative similar to histone... 126 1e-29
At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12) si... 74 9e-14
At3g14370.1 68416.m01818 protein kinase family protein contains ... 31 1.1
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro... 28 5.8
>At5g65360.1 68418.m08221 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 165 bits (402), Expect = 2e-41
Identities = 80/94 (85%), Positives = 87/94 (92%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
FQS+A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At5g10400.1 68418.m01206 histone H3 identical to several histone H3
proteins, including Zea mays SP|P05203, Medicago sativa
GI:166384, Encephalartos altensteinii SP|P08903, Pisum
sativum SP|P02300; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 136
Score = 165 bits (402), Expect = 2e-41
Identities = 80/94 (85%), Positives = 87/94 (92%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
FQS+A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At5g10390.1 68418.m01205 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 165 bits (402), Expect = 2e-41
Identities = 80/94 (85%), Positives = 87/94 (92%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
FQS+A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At3g27360.1 68416.m03421 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 165 bits (402), Expect = 2e-41
Identities = 80/94 (85%), Positives = 87/94 (92%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
FQS+A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At1g09200.1 68414.m01027 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 165 bits (402), Expect = 2e-41
Identities = 80/94 (85%), Positives = 87/94 (92%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
FQS+A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2,
MINOR, Medicago sativa, SWISSPROT:P11105, histone H3
variant H3.3 Lycopersicon esculentum GI:1435157;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 164 bits (399), Expect = 5e-41
Identities = 81/94 (86%), Positives = 86/94 (91%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
FQS A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 118
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 164 bits (399), Expect = 5e-41
Identities = 81/94 (86%), Positives = 86/94 (91%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
FQS A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 118
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 164 bits (399), Expect = 5e-41
Identities = 81/94 (86%), Positives = 86/94 (91%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
FQS A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 118
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At1g75600.1 68414.m08784 histone H3.2, putative strong similarity
to histone H3.2 SP|P11105 GI:417103 from Lolium
temulentum, histone H3.2 from Mus pahari GI:515005;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 163 bits (396), Expect = 1e-40
Identities = 80/94 (85%), Positives = 86/94 (91%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQD+KTDLR
Sbjct: 25 AARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
FQS A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 118
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDVQLARRIRGERA 136
>At5g65350.1 68418.m08220 histone H3 nearly identical to histone H3
from Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 139
Score = 162 bits (393), Expect = 3e-40
Identities = 77/94 (81%), Positives = 87/94 (92%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AAR+SAP+TGGVKKPHR+RPGTVALR+IR+YQKSTE+LIRKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
FQS+A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 FQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIMPK+IQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKEIQLARRIRGERA 136
>At1g13370.1 68414.m01554 histone H3, putative strong similarity to
Histone H3.2, minor Medicago sativa SP|P11105, histone
H3 Rubus idaeus GI:10732809; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 160 bits (388), Expect = 1e-39
Identities = 79/94 (84%), Positives = 85/94 (90%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 AARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 180
AARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELL RKLPFQRLVREIAQDFKTDLR
Sbjct: 25 AARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLR 84
Query: 181 FQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
FQS A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 FQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 118
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIMPKD+QLARRIR ERA
Sbjct: 110 LCAIHAKRVTIMPKDVQLARRIRAERA 136
>At1g19890.1 68414.m02494 histone H3, putative similar to histone H3
from Chlamydomonas reinhardtii GI:571470, Volvox carteri
SP|P08437, histone H3.2 minor from Lolium temulentum
SP|P11105; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 137
Score = 144 bits (348), Expect = 7e-35
Identities = 73/95 (76%), Positives = 81/95 (85%), Gaps = 2/95 (2%)
Frame = +1
Query: 1 AARKSA-PSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL 177
AARK+ P GGVK+ HR+RPGTVALREIR+YQKST+LLIRKLPFQRLVREIAQDFK DL
Sbjct: 25 AARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKVDL 84
Query: 178 RFQSAAIGALQEASEAYLVGLFEDTN-CVLFTPNV 279
RFQS A+ ALQEA+EAYLVGLFEDTN C + V
Sbjct: 85 RFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 119
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGERA 335
LCAIHAKRVTIM KDIQLARRIRGERA
Sbjct: 111 LCAIHAKRVTIMSKDIQLARRIRGERA 137
>At5g12910.1 68418.m01481 histone H3, putative similar to histone H3
from Mus musculus GI:51301, Gallus gallus GI:211859,
Medicago sativa GI:166384, Pisum sativum SP|P02300;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 126 bits (305), Expect = 1e-29
Identities = 57/78 (73%), Positives = 71/78 (91%)
Frame = +1
Query: 22 STGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIG 201
ST +KKP+RY+PGTVALREIR+YQK+T+L+IRKLPFQRLV+EIAQ K DLRFQ+ A+
Sbjct: 27 STPPLKKPYRYKPGTVALREIRKYQKTTDLVIRKLPFQRLVKEIAQSLKADLRFQTGAVS 86
Query: 202 ALQEASEAYLVGLFEDTN 255
ALQEA+EA++VG+FEDTN
Sbjct: 87 ALQEAAEAFMVGMFEDTN 104
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGER 332
LCA+HAKR TIMPKDIQLA+R+RG+R
Sbjct: 105 LCAMHAKRSTIMPKDIQLAKRLRGDR 130
>At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12)
similar to histone H3 GB:X17141 GI:10795 from
Tetrahymena pyriformis, GI:161790 from Tetrahymena
thermophila; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 178
Score = 74.1 bits (174), Expect = 9e-14
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +1
Query: 10 KSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL--RF 183
+ A G KK +RYRPGTVAL+EIR +QK T LLI F R VR I R+
Sbjct: 66 RQAMPRGSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPPQINRW 125
Query: 184 QSAAIGALQEASEAYLVGLFEDT 252
+ A+ ALQEA+E YLVGLF D+
Sbjct: 126 TAEALVALQEAAEDYLVGLFSDS 148
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +3
Query: 255 LCAIHAKRVTIMPKDIQLARRIRGE 329
LCAIHA+RVT+M KD +LARR+ G+
Sbjct: 150 LCAIHARRVTLMRKDFELARRLGGK 174
>At3g14370.1 68416.m01818 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 404 FNISET*KSYRITSNQNYN*TNLSTFTTDSSSKLNILRHDGHTFGVNSTQLVSSN 240
F S S ++ N + ++ T ++ SSS +N RHD H + S +L+SS+
Sbjct: 26 FASSSARTSLTLSFNDRLSTSSAVTTSSTSSSSVNHRRHDPHWSAIKSAKLLSSD 80
>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
P450 76A2, eggplant, PIR:S38534
Length = 516
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 286 MVTRLA*IAHNWCLRTSQRDKPRLPPGELRWRQTGNANQ 170
+ T +A + + CL ++R + RLPPG W GN Q
Sbjct: 13 LFTSIAVLIYVTCLFYTKRCRTRLPPGPNPWPVIGNIFQ 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,111,890
Number of Sequences: 28952
Number of extensions: 280371
Number of successful extensions: 687
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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