Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30447
         (892 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   1.1  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    25   1.1  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   4.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   9.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   9.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   9.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 302  GHNDPSSSLEQKRRSRHPKLPSRRKW 379
            G  DPS +L  + R   P +PS  K+
Sbjct: 1474 GTGDPSDTLNPRTRGEKPIVPSAEKF 1499


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 522 DCFCEFRSAQEARMAAAKHGKDLEGCRITVDLVPRMSSK 638
           +C+C   S    R     H  D +G R+T + V  M  K
Sbjct: 80  ECYCCRESFLRERTITLTHCYDPDGVRLTAETVNSMDVK 118


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 278 ILARPPRTGHNDPSSSLEQKRRSRHPKLPS 367
           IL  PP        SSL + +RS+  K P+
Sbjct: 55  ILKNPPNLNPAVQGSSLTEGKRSKRSKRPN 84


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 278 STEPPGKP*TA 246
           ST PPGKP T+
Sbjct: 150 STSPPGKPATS 160


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 278 STEPPGKP*TA 246
           ST PPGKP T+
Sbjct: 150 STSPPGKPATS 160


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 278 STEPPGKP*TA 246
           ST PPGKP T+
Sbjct: 150 STSPPGKPATS 160


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 278 STEPPGKP*TA 246
           ST PPGKP T+
Sbjct: 150 STSPPGKPATS 160


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 278 STEPPGKP*TA 246
           ST PPGKP T+
Sbjct: 150 STSPPGKPATS 160


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 278 STEPPGKP*TA 246
           ST PPGKP T+
Sbjct: 106 STSPPGKPATS 116


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 278 STEPPGKP*TA 246
           ST PPGKP T+
Sbjct: 150 STSPPGKPATS 160


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 278 STEPPGKP*TA 246
           ST PPGKP T+
Sbjct: 150 STSPPGKPATS 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,539
Number of Sequences: 336
Number of extensions: 4117
Number of successful extensions: 23
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)