Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30447
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    28   2.1  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   2.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.7  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    27   4.7  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   6.3  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   8.3  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   8.3  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   8.3  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    26   8.3  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 519 GDCFCEFRSAQEARMA-AAKHGKDLEGCRI 605
           G CFCEF++  +A +A +   GKD  G ++
Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKL 381


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +1

Query: 181 CTVLRTTLCSPAVVPAGGFRNTAVHGFPGGSVDPRTAAKNWAQRPQFQPRAETSIPA 351
           C+++     SP ++  G F +T V      +  P  +A + A    F  +   S+P+
Sbjct: 159 CSIVCVCTFSPIMIGKGNFTSTTVTTTTSATATPTASASSNAVESVFVTKTAASVPS 215


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +1

Query: 322  QPRAETSIPAPKVAISTEMDDAPLDCVLMKGLPRGATDRTIVTFLADTGAVPARIHLMLD 501
            QPR    I         E+DD P +C L      G T++ +   +        R +L+  
Sbjct: 904  QPRVVPHIQIKSTKFKFEVDDDPFECRLGMNYRIGLTEQQM--RIDRWNIFEERANLLRK 961

Query: 502  TNDCLPETASANSA 543
              D  P++AS +S+
Sbjct: 962  AKDPSPKSASESSS 975


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 490 DVSSPGRLRCPPGT*RWCDLWRRGGD 413
           +V S  R R PP   R+ D +RRGGD
Sbjct: 179 EVPSRFRSRSPPARRRYRDDYRRGGD 204


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +2

Query: 344 SRHPKLPSRRKWTTRHSTAYL*RVSPAAPQIAPSSRSWRTPEPSRRGYISCSTPTTAFRR 523
           S  P    ++ W ++H    +    P   Q         TPEPS   + + S+P +A RR
Sbjct: 16  SSSPMASHKKSWLSKHPNQSMTFEKPQLGQFV------LTPEPSSNTFYAPSSPASAVRR 69


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 394 DCVLMKGLPRGATDRTIVTFLADTGAV 474
           DC+ +  LP   +DR ++    D G+V
Sbjct: 280 DCIYVGNLPWATSDRNLLDLFTDIGSV 306


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = -1

Query: 763 DPRFPEK-VRVVKILRASVRKNGRRRTFPSNEGLRLLRSL*CLFDDIRGTRST----VMR 599
           D  FP   V   +  R + R+N R R FPSN  L  L  +  L   +   RS+    +M 
Sbjct: 42  DDSFPSSPVLSPRRRRMNRRRNERSRNFPSNH-LSYLEDMIYLGPQVSTRRSSSRRDLMG 100

Query: 598 QPSRSFPCFAA 566
             +R+FP F++
Sbjct: 101 MIARTFPEFSS 111


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 797 RLTAVGFYQFIEQLRFKI 850
           RLT++GF+ F++ L+F +
Sbjct: 233 RLTSLGFFDFVQYLQFAV 250


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 686 GPPPSVLSHRCAEDFHHADLFGEPRVETRKLST 784
           GP  +VL+ RC   F   D+FG+   + RK+++
Sbjct: 412 GPRTNVLNRRCKVIFDMLDIFGKSSAD-RKMNS 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,333,265
Number of Sequences: 5004
Number of extensions: 67078
Number of successful extensions: 219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)