Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30447
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0442 + 3495333-3496484                                           30   2.1  
02_05_1295 + 35531565-35531834                                         30   2.1  
09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359...    30   2.8  
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054...    30   2.8  
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    30   2.8  
10_08_0999 + 22121029-22121235,22121819-22122082,22122123-221223...    29   5.0  
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702...    29   5.0  
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541...    29   6.6  
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581...    29   6.6  

>12_01_0442 + 3495333-3496484
          Length = 383

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
 Frame = +2

Query: 302 GHNDPSSSLEQKRRSRHPKLPSRRKWTTRHSTAYL*RVSPAAPQIAPSSRSWRT----PE 469
           GH  PSSS +     R PKLP  R   T+ +       +P  P   P+S   +T     +
Sbjct: 182 GHKPPSSSPDIYLVRRTPKLPVTRPPRTKQAPPTAPAPAPPPPPPQPASPKTKTKAKAKK 241

Query: 470 PSR-RGYISC-STPTTAFR 520
           P R R  + C ST T  +R
Sbjct: 242 PKRKRSCVHCGSTETPQWR 260


>02_05_1295 + 35531565-35531834
          Length = 89

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 540 GIRRSSLRKAVVGVE-HEMYPRRDGSGVRQERDDGAICGAAGETLHKYAVEWRVV 379
           G RR+   +AV G   HE+ P    S   QE++ G + GA      KYAV  R+V
Sbjct: 29  GSRRAFREEAVSGFRSHELAPTMAPS---QEKEAGVVAGAGSICGQKYAVSRRMV 80


>09_04_0739 -
           19833462-19834456,19835272-19835333,19835846-19835937,
           19836271-19836540,19836795-19836913,19836947-19837778
          Length = 789

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 296 RTGHNDPSSSLEQKRRSRHPKLPSRRKWTTRHSTAYL*RVSPAAPQIAPSSRSWRTPEPS 475
           +T  N PS   + K   +HP    R    +  +   L  V P + ++  +S SW T  PS
Sbjct: 343 KTTANAPSDDAD-KAMKKHPPTVKRTSGISNPNVTNLVEVPPNSKKLTDASNSWTTLPPS 401


>08_02_0880 + 22203440-22204324,22204763-22204876,22204964-22205455,
            22205646-22205819,22206589-22206978,22209927-22210022,
            22210645-22210760,22210872-22211042,22211126-22211285,
            22211388-22211573,22211665-22211793,22211918-22211996,
            22212159-22212268
          Length = 1033

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = -2

Query: 801  NRNLPSVESFRVSTLGSPKRSAW*KSSAHLCERTEGGGPFRATKG 667
            +R+  S  SF VST  S KR A+  S AH    T   G F   KG
Sbjct: 873  SRSDDSANSFSVSTASSNKRRAYRTSRAHFYWVTREPGSFEWFKG 917


>03_02_0602 +
           9759055-9759223,9759305-9759455,9759548-9759593,
           9759974-9760033,9760519-9760555,9761268-9761347,
           9761413-9761516,9761613-9761673,9762962-9763019,
           9763866-9763918,9764357-9765320,9766131-9766185,
           9767223-9768786
          Length = 1133

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 797 ETFLRSKASAFRPSVPRKGPRGENPPRICAKERKAADLSEQRRAPAA 657
           +T +    SA  PS P K P+ ++P    A   K+ D+SE++R   A
Sbjct: 655 QTLVEFSTSAPPPSPPLKAPKPKSPRFPHAPASKSLDMSEKKRRGGA 701


>10_08_0999 +
           22121029-22121235,22121819-22122082,22122123-22122324,
           22122456-22122590,22122668-22122778,22122871-22122959,
           22123237-22123299,22123461-22123636,22123785-22123887,
           22124286-22124461,22124625-22124733,22124851-22124943,
           22126294-22126435,22126655-22126671
          Length = 628

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +1

Query: 346 PAPKVAISTEMDDAPLDCVLMKGLPRGATDRTIVTF-LADTGAVPARIHLMLDTNDCLPE 522
           PAP  A +      P   V  + L    +DR      L   G++ A+ ++  +T D   +
Sbjct: 23  PAPPAAAAAAAPPQPRRAVAARSLRTSTSDRVAADLALGSNGSLSAQ-NIAENTADATSQ 81

Query: 523 TASANSARHKK 555
             SANS R  K
Sbjct: 82  VVSANSRRKTK 92


>02_05_0235 - 27068516-27069032,27069697-27069788,27070056-27070289,
            27071569-27071676,27071796-27071855,27072368-27072443,
            27072550-27072710,27076919-27076981,27077061-27077148,
            27077568-27078308,27078406-27079033,27079314-27079368,
            27082073-27083527
          Length = 1425

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +1

Query: 190  LRTTLCSPAVVPAGGFRNTAVHGFPGGSVDPRTAAKNWAQRPQFQPRAETSIP 348
            L TT C P +   G  RN +  G  G S+  R AAK  +       R+  S P
Sbjct: 1213 LSTTSCKPDLKVVGHARNMSSLGLEGQSIYQRRAAKFSSVHSDIHVRSYISCP 1265


>08_01_0620 -
           5416197-5416225,5416333-5416652,5417144-5417235,
           5417304-5417394,5417489-5417577,5417812-5417929,
           5418007-5418098,5418180-5418215,5418323-5418403,
           5418510-5418617,5418809-5418901,5419045-5419146,
           5419345-5419449,5419526-5419612,5419952-5420227
          Length = 572

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 534 EFRSAQEARMAAAKHGKDLEGCRITVDL 617
           +F S++EA+ A   HG DL+G  + +DL
Sbjct: 357 QFASSEEAKKALELHGCDLDGRPVRLDL 384


>06_03_0650 +
           23157130-23157582,23157687-23157898,23157982-23158128,
           23158214-23158347,23158442-23158551,23158711-23158817,
           23159045-23159183,23159286-23159402,23159737-23159844,
           23159927-23159998,23160108-23160230,23160336-23160495,
           23160585-23160706,23160825-23160962,23161042-23161184,
           23161305-23161367,23161567-23161630,23161709-23161844,
           23162123-23162196,23162764-23162858,23162951-23162982,
           23163104-23163276
          Length = 973

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 211 PAVVPAGGFRNTAV-HGFPGGSVDPRTAAKNWAQRPQFQPRAETSIPAPKVA 363
           PA   AGG R     HG  GG   P  A K   Q    QP+AET+     VA
Sbjct: 8   PAAGKAGGGRGHGHGHGHGGGGGGP-AARKQPLQSSMAQPKAETAAATAAVA 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,295,889
Number of Sequences: 37544
Number of extensions: 620185
Number of successful extensions: 2468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2465
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)